Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01773 ATGGCCAAGAAACGAAAGGTCCGATCCTCCGACCCCGAGCCCACTAAACCCGTCGAGCCAGCCCAGCAAGATCAAGACCCAGTCGAACTCcaacaacaacaacaacaagaaccacaacCCGAGCCAACCCTCCAAGACCCCAACGCCATGTCCCTCGACGAACCCGCACACGAAGAGCAACACCTTCAAGAGCAAAACCCCgaggaagaggaggaggacgaggaggaagaTCAGCAGAAACCCGAAACCCTAGAGGAGGACCAACCCGAAACCCTAGAAGAGGCGAACCACGCCGCCGAGGCGAACGGCGCCGAGGAAGAAGAGGAGAACGAGGACCTCACTCTGGAAGAAGAGCCCGTGGAGAAGCTTCTCGAACCCTTCACGAAGGAGCAGCTTCACTCGCTCGTGAAACAGGCCGTTGAGAAGTTCCCTGAATTCGTCGACAGCGTTCGCCAGCTCGCCGATGTGGACCCCGCCCACCGGAAAATCTTCGTCCACGGCCTAGGCTGGGACGCCACCGCCGAAACCCTAACCTCGGTTTTCGGAAAGTACGGCGAGATCGAAGACTGCAAGGCCGTCACCGACAAGGTTTCCGGCAAATCGAAGGGTTACGCCTTTATCTTGTTCAAGCACAGGGACGATGCTCGCAAGGCGCTGAAGAATCCCCAGAAGAAGATCGGGAACCGCACCACATCATGCCAGCTGGCCTCCGCCGGCCCGGTGCCGGCTCCGCCGCCGAATGCAAATCCGGTGTCGGAGTACACCCAGAGGAAGATCTTTGTGAGCAATGTCAGTGCTGAGATTGAGCCCCAGAAGCTGCTTGAATTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGACCTCTTGGTCTTGACAAGAACACTGGGAAACCCAAGGGTTTTGCTCTGTTTGTTTACAAGTCTGTGGAGAGTGCCAAGAAGGCTTTGGAAGAGCCTCATAAGAACTTTGAGGGGCATACTTTGTATTGCCAGAAGGCTGTTGATGGTCCTAAGGGGAACAAGGGGTAtcatcagtatcaccaccagcagcattctcatcaccaccatcaccatcagcctcactatTCCAGGAAGGATAAGAACAAGTATTCATCTGGTGGCGGTGGACCCTCGCATGGTAGTGGTCATTTGATGGCCCCTTCGGGGTCTGCTGTCGGGGGTTTCAACCCTGGCGTGCCCGCGCAGGGTTTGAATCCGGCGCTTGGACAGGCTTTGACTGCGTTGCTTACAAATCAGGGAGCTGGACTTGGGGGGCTTGGAAATCTGCTTGGAGGGCTTGGTGGTGCGCCGGTTAACCAGGCAGGGCCTCCTGCTTCGTATGGGAATCAGCCTGCTATGGGCTATGGGAACCAACCTGCAATGCAACCAGGTTATCAGAATCCTCAAATGGGGCAGAACAGTGGTGTGAGACCTCACCCTGGTGCTGGTGCTCCTTACATGGGCCATTAG 1467 0.5222 MAKKRKVRSSDPEPTKPVEPAQQDQDPVELQQQQQQEPQPEPTLQDPNAMSLDEPAHEEQHLQEQNPEEEEEDEEEDQQKPETLEEDQPETLEEANHAAEANGAEEEEENEDLTLEEEPVEKLLEPFTKEQLHSLVKQAVEKFPEFVDSVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIEPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHQPHYSRKDKNKYSSGGGGPSHGSGHLMAPSGSAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGGLGNLLGGLGGAPVNQAGPPASYGNQPAMGYGNQPAMQPGYQNPQMGQNSGVRPHPGAGAPYMGH 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01773 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 335 IPR000504 GO:0003723
Cca05g01773 488 MobiDBLite consensus disorder prediction 1 116 - -
Cca05g01773 488 MobiDBLite consensus disorder prediction 337 390 - -
Cca05g01773 488 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 475 - -
Cca05g01773 488 SUPERFAMILY RNA-binding domain, RBD 241 356 IPR035979 GO:0003676
Cca05g01773 488 SMART rrm1_1 258 330 IPR000504 GO:0003723
Cca05g01773 488 SMART rrm1_1 162 234 IPR000504 GO:0003723
Cca05g01773 488 Coils Coil 96 116 - -
Cca05g01773 488 MobiDBLite consensus disorder prediction 84 103 - -
Cca05g01773 488 SUPERFAMILY RNA-binding domain, RBD 149 241 IPR035979 GO:0003676
Cca05g01773 488 MobiDBLite consensus disorder prediction 460 488 - -
Cca05g01773 488 MobiDBLite consensus disorder prediction 65 83 - -
Cca05g01773 488 Gene3D - 51 243 IPR012677 -
Cca05g01773 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 230 IPR000504 GO:0003723
Cca05g01773 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Cca05g01773 488 MobiDBLite consensus disorder prediction 343 363 - -
Cca05g01773 488 MobiDBLite consensus disorder prediction 25 46 - -
Cca05g01773 488 CDD RRM_RBM24_RBM38_like 257 332 - -
Cca05g01773 488 Gene3D - 244 381 IPR012677 -
Cca05g01773 488 CDD RRM_RBM24_RBM38_like 161 236 - -
Cca05g01773 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Cca05g01773 488 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01773 Cca-Chr5 37353255 37357946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01773 253 336 C2H2 Transcription Factor Family AT2G19380 29.762 2.62e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01773 K12741 - gmx:100783742 702.59