Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01770 ATGGATTCTTTTGGGACCAATGGAAATGAGACCGAGGATTCCTTGCCTCCACCTCCTCCACCTCCCGTGGTGCCATCTGATGTTGTACCTGTCAAAGCTGAACCGGAGAAGAAGAAGCCTTTGAGGCTTCCAATGGCGAGGCGTGGCTTAGCTTCAAAAGGAATGAAGATGCAACTTCTTACTAATCACTTCAAAGTGAACGTTGGAAACACTGATGGATACTTCTATCAGTATAGTGTGTCTCTTACTTATGAAGATGGCCGGCCTGTGGAGGGTAAGGGCGTAGGGAGGAAAGTGCTGGACAGGGTGCAGGAAACTTATGATTCTGAATTGAAtgggaaggattttgcttatgatggtgagaagactttgtttacactaggttctctggatcgcaacaagcttgagtttactgtggtgttggaggatgttacttctagcagAAATAATGGAAACTGCAGCCCTGATGGAAATGGAGAACCAAATGAATTTGACAAGAAGAGGATGAGACGCCCTAATAGAGCAAAGACATATAATGTTGAGCTGAGCTTTGCTTCCAAAATTCCATTGCAGGCAATTGCCAGTGCCCTACGGGGGCAGGAATCAGAAAATTTTCAAGAAGCAATCAGAGTGCTTGATATCATTTTGAGGCAACATGCTGCTAAACAAGGCTGTTTGCTTGTGCGGCAATCATTTTTTCACAATGATGCTAAGAATTATGCTGACGTAGGAGGAGGTGTACTGGGTTGTAGGGGATTTCATTCTAGTTTTAGAACAACTCAGAGTGGCTTGTCTCTCAACATAGATGTGTCAACCACTATGGTAATTAGCCCTGGGCCTGTGGTGGATTTTCTCATTTCCAATCAGAATGTTAGAGATCCATATTCTCTTGACTGGGCAAAGGCCAAGAGGACACTGAAAAATTTGAGGATTAAAACTAGTCCATCTAATCAAGAATTCAAAATCACTGGGCTCAGTGAACTTCCTTGCAAAGAGCAATTGTTTACATTGAAGAAAAAAGCTGGAGCGGATGGTGATGATGCCACTGAGGAAGTTACCGTATTGGATTATTTTGTCAATCATCGCAAGATAGATCTCCGTTACTCTGCTGAACTTCCATGCATCAACGTTGGAAAGCCAAAACGGCCAACTTATTTCCCCATTGAGCTTTGCTCTTTGGTATCCCTTCAACGCTATACAAAAGCGCTATCCACTCTTCAGAGGTCTTCATTGGTGGAGAAGTCTAGGCAGAAGCCACAGGAGAGGATGAGGGTGTTGTCTGATGCTCTTAAAACTAGCAATTATGGCGCTGAACCTATGCTTCGCAATTGTGGGATTACTATAAACTCTGGCTTTACAGAAGTTGAGGGTCGTGTTCTCCAAGCTCCAAGGTTGAAGTTTGGTAACGGGGAAGACTTCAACCCAAGAAATGGCAGGTGGAACTTCAATAATAAGAAAATTGTTAAACCAACTAAAATTGAAAGATGGGCTGTGGTTAACTTTTCTGCACGCTGTGATGTACGTGGGCTTGTGAGGGATCTCATTAAGTGTGGTTCGATGAAAGGAATTGTGATTGATCAGCCTTTTGATGTATTTGAAGAAAATGGTCAGTTTAGGCGTGCACCTCCCCTGGTTAGAGTTGAGAAGATGTTTGAGTTTATTCAGTCTAAACTTCCCGGTGCTCCTCAGTTTCTTCTTTGTCTTCTTCCTGAAAGGAAAAATTCTGATCTTTATGGTCCGTGGAAGAAGAAGAATCTGGCTGATTTTGGGATTGTTACTCAGTGTATAGCTCCAACTAGGGTCAATGATCAGTATTTAACTAATGTTTTGTTGAAAATCAATGCTAAGCTGGGTGGCCTGAATTCAATGTTGGGTGTTGAGCATTCTCCTTCTATTCCTCTGGTTTCCAGAACTCCTACTATTATCATTGGCATGGATGTGTCTCATGGCTCGCCAGGCCAAACAGATATTCCTTCAATTGCAGCGGTGGTTAGCTCTCGAGAATGGCCTCTAATATCAAAGTATAGGGCGTGCGTCCGTACCCAGTCTCCAAAGGTTGAAATGATTGATAATTTATTCAAGAAAGTGTCTGAAAAGGAGGATGATGGAATAATGAGGGAACTTCTACTTGACTTCTATACTAGTTCTGGGAACAGGAAGCCTGAAAATATAATCATCTTCAGGGATGGTGTTAGTGAGTCGCAGTTCAATCAAGTTTTAAATAAGGAACTTGATCAAATTATTGAGGCATGTAAATTTCTTGATGAAAAATGGAATCCCAAATTCTTGGTGATTGTTGCTCAAAAGAATCATCATACTAAATTCTTCCAGCCTGGGTCTCCTGACAATGTTCCCCCTGGAACTGTAATTGATAATAAAATTTGCCATCCTCGGAATTACGATTTCTATATGTGTGCACATGCTGGAATGATAGGTACTAGCAGGCCTACACATTATCATGTTCTGTTAGATGAGATTGGTTTTTCTCCCGATGATCTACAGGAGCTTGTGCATTCCTTATCATATGTGTATCAGAGGAGCACTACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACTCAGATGGGCCAGTTTATGAAATTTGAGGATAAATCGGAGACGTCTTCGAGTCATGGTGGTCAGGGTCAGGCTGCACCTCCAGTCCCTCAGTTGCCTAGGTTGCAGGAAAATGTGTCCAGCTCAATGTTCTTTTGTTGA 2733 0.4083 MDSFGTNGNETEDSLPPPPPPPVVPSDVVPVKAEPEKKKPLRLPMARRGLASKGMKMQLLTNHFKVNVGNTDGYFYQYSVSLTYEDGRPVEGKGVGRKVLDRVQETYDSELNGKDFAYDGEKTLFTLGSLDRNKLEFTVVLEDVTSSRNNGNCSPDGNGEPNEFDKKRMRRPNRAKTYNVELSFASKIPLQAIASALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDAKNYADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMVISPGPVVDFLISNQNVRDPYSLDWAKAKRTLKNLRIKTSPSNQEFKITGLSELPCKEQLFTLKKKAGADGDDATEEVTVLDYFVNHRKIDLRYSAELPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMRVLSDALKTSNYGAEPMLRNCGITINSGFTEVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVKPTKIERWAVVNFSARCDVRGLVRDLIKCGSMKGIVIDQPFDVFEENGQFRRAPPLVRVEKMFEFIQSKLPGAPQFLLCLLPERKNSDLYGPWKKKNLADFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSMLGVEHSPSIPLVSRTPTIIIGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSPKVEMIDNLFKKVSEKEDDGIMRELLLDFYTSSGNRKPENIIIFRDGVSESQFNQVLNKELDQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAATQMGQFMKFEDKSETSSSHGGQGQAAPPVPQLPRLQENVSSSMFFC 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01770 910 MobiDBLite consensus disorder prediction 1 40 - -
Cca05g01770 910 Pfam Piwi domain 565 872 IPR003165 GO:0003676
Cca05g01770 910 Gene3D - 459 625 - -
Cca05g01770 910 MobiDBLite consensus disorder prediction 874 896 - -
Cca05g01770 910 Coils Coil 737 757 - -
Cca05g01770 910 MobiDBLite consensus disorder prediction 13 28 - -
Cca05g01770 910 ProSiteProfiles PAZ domain profile. 303 395 IPR003100 GO:0005515
Cca05g01770 910 Pfam PAZ domain 282 411 IPR003100 GO:0005515
Cca05g01770 910 SMART DUF1785_2 226 278 IPR014811 -
Cca05g01770 910 ProSiteProfiles Piwi domain profile. 564 872 IPR003165 GO:0003676
Cca05g01770 910 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 909 - -
Cca05g01770 910 Pfam N-terminal domain of argonaute 56 216 IPR032474 -
Cca05g01770 910 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 909 - -
Cca05g01770 910 SUPERFAMILY Ribonuclease H-like 548 870 IPR012337 -
Cca05g01770 910 Pfam Argonaute linker 2 domain 421 467 IPR032472 -
Cca05g01770 910 CDD PAZ_argonaute_like 278 394 - -
Cca05g01770 910 SUPERFAMILY PAZ domain 273 435 IPR036085 GO:0005515
Cca05g01770 910 Gene3D - 631 910 IPR036397 GO:0003676
Cca05g01770 910 SMART Piwi_a_2 564 872 IPR003165 GO:0003676
Cca05g01770 910 Pfam Argonaute linker 1 domain 228 276 IPR014811 -
Cca05g01770 910 Gene3D paz domain 272 399 - -
Cca05g01770 910 MobiDBLite consensus disorder prediction 874 888 - -
Cca05g01770 910 CDD Piwi_ago-like 439 866 IPR045246 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01770 Cca-Chr5 37315916 37324247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01770 47 910 Eukaryotic Initiation Factors Gene Family AT5G43810 34.989 5.76e-160 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01770 K11593 - gmx:100779439 1662.51