Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01764 ATGCAGGTTATCTGGTTGATGTTATTGTTGTTGGTGGCTATTGCATTGGGGAATTCAGACATTGATGCACTCCTTGAGTTGAAGAAGAGTATACAGAATGACCCTTCTGAATTAGTTGTTAATTCTTGGGATTCAAGGTCTTTAGATTCCGATGGATGTCCTCGGAACTGGTATGGGATATTGTGTAGTGAAGGTAGTGTTACATCAATCACTCTGGATAATGCTGGTTTGGTTGGTGAGTTTAATTTCCTTGCAATTAGTGGCCTTACAATGCTTAGCAATTTGTCAGTTGTGAACAACCAGTTCACAGGAGATCTCTTGCATATTGCTACAATGGAATCACTTGAATATCTTGATTTGTCCCTCAACAAGTTTAATGGGCCGTTACTCACTAACTTAGTTCAATTGCGCAAGTTAGCATATTTGAATCTTTCTTCAAATGAACTTGGAGGTACTCTTCCTATTGAGTTTCACAAACTTGAGCAGTTGAAGTATTTAGACTTGCACATGAACAACTTTTCTGGGGATATTATGCATATCTTTTCTCAGATGGGAAGTGTGATATATGTTGACTTGAGCAGCAATAGATTTTCTGGTACACTGGATTTGGGAATTGCAAATGACTCATTTCTCTCCTCAATCCAACATTTAAATGTTAGCCATAATTCCTTGAGTGGTGAGTTATTTGCTCATGATGGTATGCCATACCTTGACAATTTAGAGGTCTTGGATGCTAGTAGTAATCAGTTAGAGGGTAATATACCTTCCTTCACGTTTGTGGTATCTCTGCGGATTCTTCGACTTGCATCCAACCAGTTGACTGGTTTACTGCCAGAAGCTTTATTGAAGGAAAGTTCAATGATGTTGTCTGAACTGGATCTTAGTCAAAACAAGCTTGAAGGTCCCATCGGAATTATTACTTCGGTGACTCTGAGGAAGCTTAATTTATCTTCAAACAAATTGTCTGGCCCCTTACCTCTCAGGGTAGGCCACTGTGCCATCATAGATTTGAGTAATAATACACTATCAGGTAATTTCTCAAGGATCCGGTATTGGGGTAACTATGTGGAAGTTGTTCAGCTAAGTATCAACTCATTGAGAGGAATGCTGCCAAATGAAACTTCTCAATTTTTAAGGTTAACTGCACTTAAGGTATCCAATAACTCATTGGATGGCTTTCTCCCACCAATCTTGGGAACATATCCAGAACTAAAAGAGATTGATCTTAGCCTCAACCAGCTTTCTGGGTTCCTACTACCAAGCTTTTTCACCTCAACCAAATTGATTAATCTTAACCTCTCCAACAATAAATTTTCTGGATCAATTCCTATTCAATTTCAGCCTCCAACTGATCCATTAGTTTCTGCTGAAAATTTTAGTCTGGTGTCTCTTGATCTTTCACACAATAACTTGAGTGGAATTCTTCCTTCAGATATGAGTAGGCTTCACAATTTGGCGTATCTCAATCTATGCAGCAACAAATTGGAAGGTACTATTCCTGATGACCTTCCAGATGAGTTGAGAGTGTTGAATGTGTCCTTTAATAATCTTTCTGGTGTTGTACCACAAAACTTAAAGCAGTTTCCTGAATCAGCATTTCATCCAGGAAATACTATGCTGATTTTTCCTAATTCACAATTTGCACCGAAAGATAGTTCCAACCTAGGTTTGAGGGAGCATTGGTTACATAAGAAATCTGCAGCTAGGATTTCCCTGATTGCATGTTTGGTTGCTGGTGCTTTTGTGATGGCTCTCGCAGGTATAATAATTTATTACAGGGTTCATCATAAAAAAGAAAGGACTTCTAAACAAAATGAAGCAAGAGGCATCCCCCAAGAGAGTACTATAGAGGCACCTTACAGAAATCTGGAAGCATTACAACCATCTCAAAGGGGGTCTGCTGATGATTCAAGGAACATTCATCCAATGGTACAGAAGCCAATAGATCTCGGCCATAGTGAATTAGTTAAGCATGAGGAAGGAACATCTTCCCCAATGTCTATTTTGTCGCCTTCAAATCCTTCATCTTCTAAAAGCCATCAGTTTGAAAATCCTGGTTCCCTCAGAGTATCCTCTCCTGATAAACTGATTGGAGACTTGCATATATTTGATGGATCCTTGGTGCTAACTGCTGAAGAACTTTCATGTGCTCCAGCAGAAGTTATTGGCAGGAGCTGTCATGGAACACTCTACAAAGCTACACTTGACTCTGGTCATGCATTGGCTGTCAAATGGTTAAGAGATGGAATAACTAAAGGAAAAAAAGAGTTGGCAAGGGAAATAAAGAAACTTGGGACTATCAAGCATCCAAACCTGGTTTCTATTCAGGGTTACTACCTGGGGCCAAAGGAACATGAGAAACTGATCATATCAAATTACATGAATGCACAATCTTTGGACATTTATCTCCATGAGGCAGAAAAAAGAAATCTGCATCCTTTGTACCTTGATGAAAGGCTCAGGGTGGCTATAGAGGTGGCTAGATGTCTGCATTACCTTCATGAAGAGAAAGCCATGCCTCATGGCAACCTCAAATCCACAAACATTTTGCTACAAACTCCCAACAGAAATGTCCTCCTAACTGACTACAGCCTGCACAGGATACTCACTGCTGCTGGTACAGCTGAGCAAGTTCTGAATGCCGGGGCACTCGGCTACCGGCCTCCTGAGTTCACCAAATCAAGCAAACCATGCCCTTCTTTGACAAGTGATGTCTATGCATTTGGAGTGGTCTTGTTGGAGCTCCTAACAGGAAGAAACTCTGGAGAAATAGTTTCTGGAATTCCAGGAGTGGTTGACCTCACAGACTGGGTGAGGTTCTTAGCTGAACAAGACCGTTCTAGCCACTGCTTTGATAGGTCTCTAGTGGACAAGCATAATGGAGAAAGAGCATCAAGAATTCTTGATGAGATGCTAAAGGTGGCTTTGAGATGCATCCTTCCAGCATCTGACAGGCCTGACATGAAAACTGTCTTTGATGATCTCACAACAATAATAAGGTAG 3003 0.4056 MQVIWLMLLLLVAIALGNSDIDALLELKKSIQNDPSELVVNSWDSRSLDSDGCPRNWYGILCSEGSVTSITLDNAGLVGEFNFLAISGLTMLSNLSVVNNQFTGDLLHIATMESLEYLDLSLNKFNGPLLTNLVQLRKLAYLNLSSNELGGTLPIEFHKLEQLKYLDLHMNNFSGDIMHIFSQMGSVIYVDLSSNRFSGTLDLGIANDSFLSSIQHLNVSHNSLSGELFAHDGMPYLDNLEVLDASSNQLEGNIPSFTFVVSLRILRLASNQLTGLLPEALLKESSMMLSELDLSQNKLEGPIGIITSVTLRKLNLSSNKLSGPLPLRVGHCAIIDLSNNTLSGNFSRIRYWGNYVEVVQLSINSLRGMLPNETSQFLRLTALKVSNNSLDGFLPPILGTYPELKEIDLSLNQLSGFLLPSFFTSTKLINLNLSNNKFSGSIPIQFQPPTDPLVSAENFSLVSLDLSHNNLSGILPSDMSRLHNLAYLNLCSNKLEGTIPDDLPDELRVLNVSFNNLSGVVPQNLKQFPESAFHPGNTMLIFPNSQFAPKDSSNLGLREHWLHKKSAARISLIACLVAGAFVMALAGIIIYYRVHHKKERTSKQNEARGIPQESTIEAPYRNLEALQPSQRGSADDSRNIHPMVQKPIDLGHSELVKHEEGTSSPMSILSPSNPSSSKSHQFENPGSLRVSSPDKLIGDLHIFDGSLVLTAEELSCAPAEVIGRSCHGTLYKATLDSGHALAVKWLRDGITKGKKELAREIKKLGTIKHPNLVSIQGYYLGPKEHEKLIISNYMNAQSLDIYLHEAEKRNLHPLYLDERLRVAIEVARCLHYLHEEKAMPHGNLKSTNILLQTPNRNVLLTDYSLHRILTAAGTAEQVLNAGALGYRPPEFTKSSKPCPSLTSDVYAFGVVLLELLTGRNSGEIVSGIPGVVDLTDWVRFLAEQDRSSHCFDRSLVDKHNGERASRILDEMLKVALRCILPASDRPDMKTVFDDLTTIIR 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01764 1000 SUPERFAMILY L domain-like 109 523 - -
Cca05g01764 1000 Pfam Leucine rich repeat N-terminal domain 18 63 IPR013210 -
Cca05g01764 1000 MobiDBLite consensus disorder prediction 600 621 - -
Cca05g01764 1000 SUPERFAMILY Protein kinase-like (PK-like) 719 995 IPR011009 -
Cca05g01764 1000 ProSiteProfiles Protein kinase domain profile. 716 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01764 1000 MobiDBLite consensus disorder prediction 657 690 - -
Cca05g01764 1000 ProSiteProfiles Leucine-rich repeat profile. 460 481 IPR001611 GO:0005515
Cca05g01764 1000 Gene3D Ribonuclease Inhibitor 181 355 IPR032675 -
Cca05g01764 1000 Gene3D Phosphorylase Kinase; domain 1 722 794 - -
Cca05g01764 1000 Gene3D Transferase(Phosphotransferase) domain 1 795 1000 - -
Cca05g01764 1000 PANTHER OS07G0626500 PROTEIN 1 998 - -
Cca05g01764 1000 SMART LRR_typ_2 482 506 IPR003591 -
Cca05g01764 1000 SMART LRR_typ_2 211 231 IPR003591 -
Cca05g01764 1000 SMART LRR_typ_2 136 159 IPR003591 -
Cca05g01764 1000 SMART LRR_typ_2 260 283 IPR003591 -
Cca05g01764 1000 Gene3D Ribonuclease Inhibitor 356 456 IPR032675 -
Cca05g01764 1000 Gene3D Ribonuclease Inhibitor 17 180 IPR032675 -
Cca05g01764 1000 Gene3D Ribonuclease Inhibitor 457 546 IPR032675 -
Cca05g01764 1000 MobiDBLite consensus disorder prediction 663 688 - -
Cca05g01764 1000 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 1 998 - -
Cca05g01764 1000 Pfam Protein tyrosine and serine/threonine kinase 720 979 IPR001245 GO:0004672|GO:0006468
Cca05g01764 1000 Pfam Leucine Rich repeat 458 472 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01764 Cca-Chr5 37223421 37229780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01764 379 991 Receptor kinase-like Gene Family AT1G48480 32.643 5.56e-62 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01764 PK_Tyr_Ser-Thr 1.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01764 - - ccaj:109792420 1922.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01764 05 37223421 37229780 Cca05g01764 05 37223421 37229780 ECH