Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01759 ATGGCCAACAACACACGCTCTGTTCGTGATGACTTTGAGAGCTTCAAGGCTTCAATGGAGACACGTTTCTTAGACATGGGAACTTCATTGGAAGCCCGCTTCATGGACATTGGGGCTTCCCTAAAGAACAGTCTTGAGGAGATGTTCCGTAACCGTGAAAACCACACTTTCcataggatcaccatggaagataaagtagcagcaacaagtgaaggacaacccataagatgtaaagcggcggtttgtcgcaaagcgggtgaaccattgagcattgaagagatcattgtggcgccaccaatgcctcgtgaagttcggattcgtgtcatatgcacctctctatgtcacagtgatattactttttggaagatgcaggtccctcctgcaatttgtccaagaattctgggtcatgaggctgttggGATTGTGGAAAGTGTAGGAGAGGATGTAAGTGAAGTTACAAAAGGAGATGTGGTTGTCCCAATTTTCTTACCTGATTGTGGTGAATGTGTTGATTGCAAATCAAGCAACAGCAACCTTTGTTCAAAGTTTGAGTTCAATGTGTCTCCTTGGATGCCTAGATATGCTACTTCTAGATTCACGGATTTAAAAGGAGAGACCATACATCATTTCCTGTTTGTTTCTAGTTTTAGCGAGTACACTGTGGTTGACATTGCCAATCTAACCAAGATTGATCCCACAATACCACCCAACAGGGCATGCCTACTTAGTTGTGGTGTATCAACTGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGAAGCCAGGGTCTTCAGTAGCAATTTTTGGACTAGGAAGTATTGGATTAGCAGTGGCTGAGGGAGCTAGACTTTGTGGAGCAACTAAGATTATAGGTGTGGATGTCAACCCAGAAAAATATGAAATTGGAAAAAAGTTTGGACTCACAGACTTTGTCCATGGTGGAGAAAGTGAAAACAAATCTGTGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTCGAATGTGTTGGTATGGCATCATTGGTGCAAGAAGCATATGCTTCTTGCAGAAAGGGTTGGGGAAAGACAATAGTTTTGGGAGTGGACAAGCCAGGATCCAAGTTAAGCCTTAGCTGTAGTGAGGTACTCATTAGTGGAAAGAGCCTCATGGGATGCTTATTTGGAGGACTCAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGACAAGgaactgaatttggatgaatttgtgactcatgaggtccatcctgccatttatccaagaattctgggtcacgaggcaataggGGTTGTGGAAAGCGTTGGAGAGGATGTAATTGAAGTTACAAAAGGAGATGTTGTTGTTCCAATTTTCTTACCTGATTGTGGAGAGTGTATAGATTGCAAATCAAGCAAGAGCAACCTTTGTTCAAAATTTCCTTTCGAGGTGTCTCCTTGGATGCCTAGATATGGCACATCTAGATTCACAGATTCAAAAGGAGAGATCATACACCATTTCCTGTCAGTTTCTAGTTTTAGCGAGTACACTGTGGTGGACATTGCCAATTTAGTCAAGATTGATCCAGCAATACCACCCAACAGAGCATGCCTGATCAGTTGTGGTATATCAGCAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTACAGTTGCTATTTTTGGACTGGGAAGTATTGGATTAGCAGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAAGATCATAGGTGTGGATGTCAACCCAGAAAAATATGAAATTGGAAAAAAATTTGGACTCACTGACTTTGTCCATGGTGGAGAAAGTGAAAATAAATCTGTGAGCAAGCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGCTGGTATGGCATCATTGATGCATGAAGCTTACGCTTCTTGTAGAAAGGGTTGGGGAAAGACAATAGTTTTGGGAGTGGACAAGCCAGGATCCAAGTTAAGCCTTAGCTGTAGTGAGGTACTCATTAGTGGAAAGAGCCTCATGGGATGCTTATTTGGAGGACTCAAACCTAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGGACAAGgaactgaatttggatgggtttgtcacacacgaggtggagttcaaggatatcaacaaagcttttgatttattgattgaaggacagtgtcttcgaTGCGTGATTTGGATGGACAAATGA 2241 0.3521 MANNTRSVRDDFESFKASMETRFLDMGTSLEARFMDIGASLKNSLEEMFRNRENHTFHRITMEDKVAATSEGQPIRCKAAVCRKAGEPLSIEEIIVAPPMPREVRIRVICTSLCHSDITFWKMQVPPAICPRILGHEAVGIVESVGEDVSEVTKGDVVVPIFLPDCGECVDCKSSNSNLCSKFEFNVSPWMPRYATSRFTDLKGETIHHFLFVSSFSEYTVVDIANLTKIDPTIPPNRACLLSCGVSTGVGAAWRTAGVKPGSSVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKYEIGKKFGLTDFVHGGESENKSVSQVIIEMTGGGADYCFECVGMASLVQEAYASCRKGWGKTIVLGVDKPGSKLSLSCSEVLISGKSLMGCLFGGLKPKSHVPILLKRYMDKELNLDEFVTHEVHPAIYPRILGHEAIGVVESVGEDVIEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSKFPFEVSPWMPRYGTSRFTDSKGEIIHHFLSVSSFSEYTVVDIANLVKIDPAIPPNRACLISCGISAGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKYEIGKKFGLTDFVHGGESENKSVSKQVIIEMTGGGADYCFECAGMASLMHEAYASCRKGWGKTIVLGVDKPGSKLSLSCSEVLISGKSLMGCLFGGLKPKSHVPILLKRYMDKELNLDGFVTHEVEFKDINKAFDLLIEGQCLRCVIWMDK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01759 746 Gene3D - 80 422 - -
Cca05g01759 746 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 70 422 - -
Cca05g01759 746 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 423 743 - -
Cca05g01759 746 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 531 707 IPR036291 -
Cca05g01759 746 PANTHER ALCOHOL DEHYDROGENASE 70 422 - -
Cca05g01759 746 PANTHER ALCOHOL DEHYDROGENASE 423 743 - -
Cca05g01759 746 SUPERFAMILY GroES-like 695 743 IPR011032 -
Cca05g01759 746 SUPERFAMILY GroES-like 70 255 IPR011032 -
Cca05g01759 746 Pfam Alcohol dehydrogenase GroES-like domain 421 527 IPR013154 -
Cca05g01759 746 Pfam Alcohol dehydrogenase GroES-like domain 102 229 IPR013154 -
Cca05g01759 746 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 135 149 IPR002328 GO:0008270|GO:0016491
Cca05g01759 746 Gene3D - 249 389 - -
Cca05g01759 746 Gene3D - 546 687 - -
Cca05g01759 746 SUPERFAMILY GroES-like 415 564 IPR011032 -
Cca05g01759 746 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 234 409 IPR036291 -
Cca05g01759 746 Gene3D - 425 739 - -
Cca05g01759 746 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 432 446 IPR002328 GO:0008270|GO:0016491
Cca05g01759 746 Pfam Zinc-binding dehydrogenase 570 691 IPR013149 -
Cca05g01759 746 Pfam Zinc-binding dehydrogenase 273 393 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01759 Cca-Chr5 37150521 37162491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01759 418 567 Monolignol Biosynthesis Gene Families AT4G37970 27.451 5.39e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01759 K00121 - gmx:100806887 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00743 09 21696212 21702761 Cca05g01759 05 37150521 37162491 PCT