Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01755 ATGGGAGAAGGAAGTAACCATCAAGCTATGACAGATGATGGGGATACTGAGCCTAGTGAAGGTGGAGTTAATAATGCTGAAAACTCTGGTTCTCATGTTGAAGTTGGGGTCTCtgagccatatgtgggtatggagtttgattctgaagatgctgcaaagactttctatagtgagtatgccaggcgagtgggtttcagcTACAAAGTTGGCCTGCATGGTCGTTCCAAAGCGGATGGGGCAAATATGTACCGGGAATTTATGTGTGGAAGGGCGGATTTGAAAAGAAAGCCTACTGAAAGTTGCAATGCAATGGTAAGGATCGAGCAGATGGgtcaaaataagtgggttgttacaaaatttgtaaaggagcatagccattCCATGGAAAGCCTTAGTAAGTTGCATAACACTAGGCCAGGTAAGCACTTTTCTAGTGTTGGAAAAACCATGCCCGAAACTTACCAAGGAGTGGGGCTTGTTCCAACTGGTGTGATGTATGTCTCTATGGATAGGAATGCAATTCCCACTAAGAATATTCATGGGATGAGGAATATTCCTGCAGCTACTGCTGCTGCTGAAACAATTCACCCGGTTAAAACTCCTACATTGATGAATTATGCTGTTAGGCTACCTACtcgaaaaaggacattagggagggatgctcagaacctgctggaatacttaaagaaaatgcaagctgagaaccctggtttcttctatgcaatacaacttgatgaagataatcatatgtctaatgtattttgggccgatgcaagatcaaggactgcttactgtcattttggtgatgcagttactctggacacaacataccgaataaatcaatgtaaagtgccatttgctccattcactggggtaaaccatcatggtcagatgattttgtttggttgtgcaatccttttggatgattctgaagcttcttttgtatggctctttaagacattcctgacagcaatgaatgaccgttaccctgtctctatcactactgatcaagacagagctatacagacagcagtttcacaagtttttcctgaaacacgccaccgtatatgcaaatggcatgtcttgcgagaaggccaggaaaagttggcccatgtatgcaacatgcatccaaattttcagattgaactttataattgtattaatctgacagaaacaaccgaggagtttgattcatcttggagttctatcatcaataaatatgaactcggaagaaatgattggcttcagtccttgtacagtgctcgtgctcaatgggttccagcatattttcgtgattcattttttgcagtaataactcctaataaaggatttgatggttctttttttgatggttttgtcaaccagcagacaacattacctatgttctttaggcagtatgaacgagctttggagtattggtttgaaaaagaattagaattagattatgaaacaatttgcaccacccctgttctgaagacaccttcccccatggagaagcaggctgctaatctctatacacgaaaaatatttgcaaagtttcaacaagagctagttgaaacttttgcttatactgccaacagaattgaagaagatggagcaaacagcatattcagggttgcaaaatttgaggatgaccaaaaggcttatatggtcacattaaacctttctgagttgagagctaactgtagttgccaaatgtttgagtattcaggcgttctatgtagacatgttctaactgtttttactgtgactaatgtacttacattaccatctcattacattttaaaacggtggacaagaaatgcaaaaagcaatactgggtcaggtgaacttgctggtgaatcacatgggcatgaatctttgacATCACGGTATGGCAATCTTTGTTGGGAAGCTATCAAATATGCTGAAGAAGGTGCGGTAACTGTGGAAACTTATGATGCTGCAATTAGTGCTCTTAGAGAAGGTGGAAAGAAGATTTCTTTCATGAAGAGAAGTGTTGCCAAAGTTCCCCTACCCAGTCATCCAGTCAGTGGGATTGCTTATGATGACAGAAAATCCCCCACTTCAACAACAGTTACAACCCCTCTTTTATGGCCATTACATGATGAAACGACAAACAGGTTTAATCTTAATGATGCTGGTACTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACAAATGACCCCCGTGTCTCTTCAGCGAGATGACGGTCCACCTGAAAACATGGTTGGTTATCCATGTCTGAAATCATTGACGTGGGTAATGGAGAAGAAGAACTCAACTCCAGGGAATCGAGTGGCTGCTATCAATCTTAAGTTGCAAGATTATAGCAGGATTCCGTCAACAGAATCAGTGGTTAAGTTTAATCTCTCAAAAGTTACCTTGGAACCATTGTTTAACCATATGGTCAACATCAGTGATCAGCTTTCCTCACCAACTAGGACTTTGGCCGTATTAAATCTCAAGTTTCCAGATACCGAGTCAACTTCTGGTGTGTGTGAAGTTAAGTTTCAGGTGTCCAAGGACACATTGGGTGCTGTGCTACGATCAATGGCTTACATTCGTGAGCAACTTTCGTGTCCTGGCGATGCACAGACAGAATCTCTATCAAAAAGGCCTCGGAAGTGA 2634 0.2096 MGEGSNHQAMTDDGDTEPSEGGVNNAENSGSHVEVGVSEPYVGMEFDSEDAAKTFYSEYARRVGFSYKVGLHGRSKADGANMYREFMCGRADLKRKPTESCNAMVRIEQMGQNKWVVTKFVKEHSHSMESLSKLHNTRPGKHFSSVGKTMPETYQGVGLVPTGVMYVSMDRNAIPTKNIHGMRNIPAATAAAETIHPVKTPTLMNYAVRLPTRKRTLGRDAQNLLEYLKKMQAENPGFFYAIQLDEDNHMSNVFWADARSRTAYCHFGDAVTLDTTYRINQCKVPFAPFTGVNHHGQMILFGCAILLDDSEASFVWLFKTFLTAMNDRYPVSITTDQDRAIQTAVSQVFPETRHRICKWHVLREGQEKLAHVCNMHPNFQIELYNCINLTETTEEFDSSWSSIINKYELGRNDWLQSLYSARAQWVPAYFRDSFFAVITPNKGFDGSFFDGFVNQQTTLPMFFRQYERALEYWFEKELELDYETICTTPVLKTPSPMEKQAANLYTRKIFAKFQQELVETFAYTANRIEEDGANSIFRVAKFEDDQKAYMVTLNLSELRANCSCQMFEYSGVLCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSNTGSGELAGESHGHESLTSRYGNLCWEAIKYAEEGAVTVETYDAAISALREGGKKISFMKRSVAKVPLPSHPVSGIAYDDRKSPTSTTVTTPLLWPLHDETTNRFNLNDAGTPVQSVADLNLPQMTPVSLQRDDGPPENMVGYPCLKSLTWVMEKKNSTPGNRVAAINLKLQDYSRIPSTESVVKFNLSKVTLEPLFNHMVNISDQLSSPTRTLAVLNLKFPDTESTSGVCEVKFQVSKDTLGAVLRSMAYIREQLSCPGDAQTESLSKRPRK 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01755 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 3 29 803 - -
Cca05g01755 877 Pfam SWIM zinc finger 551 583 IPR007527 GO:0008270
Cca05g01755 877 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 803 IPR031052 GO:0006355
Cca05g01755 877 SMART 26again6 560 587 IPR006564 GO:0008270
Cca05g01755 877 Pfam FAR1 DNA-binding domain 54 128 IPR004330 -
Cca05g01755 877 ProSiteProfiles Zinc finger SWIM-type profile. 549 585 IPR007527 GO:0008270
Cca05g01755 877 Pfam MULE transposase domain 271 362 IPR018289 -
Cca05g01755 877 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01755 Cca-Chr5 37129130 37135429 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca05g01755 MULE 3.8e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01755 - - gmx:100807296 1517.67