Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01747 ATGGCGGGAGCGTTGTCGCTGCCGACGAGTTCGAAGTCGGTGACGCAGACGGTGAACGGCTCGCACCGGTTCGTGATCCAGGGGTACTCGCTGGCGAAGGGGATGGGAGTGGGGAAGCACATTGCGAGCGATTTGTTCAGCGTCGGAGGGTACCACTGGGCGATCTACTTCTACCCCGACGGCAAGAACCCCGAGGACAATTCCACTTACGTCTCCGTCTTCATCGCCTTGGCCAGCGAAGGCACCGACGTCAGGGCGCTCTTCGAACTCACGCTCCTCGACCAGAGCGGCCAGGGGAAGCACAAGGTTCACAGCCATTTCGATCGCTCCCTCGAGAGCGGCCCCTACACGCTCAAGTATAAGGGTAGCATGTGGGGGTACAAGCGGTTTTTCAGACGGTCTATACTTGAAAGCTCTGATTTCCTCAAGAATGATTGTTTGAAAATAAACTGTACAGTTGGAGTTGTGGTTTCAGCAATTGATTGTCCACAACGTAACTCTATTAACATCCCGGAAACTGACATTGGATCACAATTTGGCACACTATTGGACAATATGGAAGGTTCGGATGTTACTTTTGATGTAGCTGGGGAGAAGTTCCCTGCTCATAAGTTGGTGTTGGCTGCTAGATCCCCAGAATTTCGATCTAAATTTTTTGGTGGTTTAGTTGAGGAAAAGAACGAGATTATTGTTACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCACTTTATCTACAGGGATACTCTTACAGAAGAGGTGGAAATGGGTTCATCAACCACAACTAACGATTTTCCAGTTTCCGAGACATTGACAGGAAAATTGTTAGCTGCAGCAGACAAGTATGGCTTGGGTAGGCTTAGATTGATGTGTGAATCTCGTCTTTGTAAGGACATTTCTGTGAATTCTGTAGCCAACATTTTAACCTTGGCTGATGATTGCCATGCTGCGGAGTTGAAAGCTGTTTGCCTTAAATTTGCTGCTCAAAATCTGGCAGCTGTCATGAGATCAGACGGATTTGAGCATATGAAAGAAAAATGCCCCTGGCTACAAGCAGAAATCTTGAAGACAATTGCGGGGTGTGAGGATGATAATTGCAGTGTAGTGGACAAAACTCAGAGTGTATGGGCCCAACTTTCAGATGGTGGTGACACGAATGGTGATCTCGCTGAAAAAATGGAGGATAAAAAAGAAAAAAGGCAAAGGAGAGGGAAAACCCTCTTCTGTCCACTTTTTCAACGTTTCAATGGAAAGTTCTTTAGAGAAAGCGGGGTTTCAATTTTCAAATACCATTCGACGACCAAGCACTCCAGCCAAGGAGCCACGGCACCAGCCACGGAGCCACCGCGCCAGCCACTCCAGCCTCCACTTTCTCCCTCCGAGCGGCTCCCTCAGCACGACTGgagTTCACCGGAAACCCTAAACCTTAGACCCGAAAAGAAAGCAGCGATGGAGAACCACCAGGAGGAGGAGAACGGCGCGGCGAACgaagcagaggcgccgaaggagaagcggaaggggaagcACGACAAGCCCAAGCCATGGGACGACGACCCCAACATCGACCACTGGAAAATCGACAAGTTCGACCCTTCCTGGAACGAAGGCGGCATGCTCGAAGTAAGCTCCTTCTCCACTCTCTTCCCTCAGTACCGCGAAAAGTACCTCCAAGAAGCATGGCCAATGGTCAAATCCTCTCTCAAACAATTCGGCGTCGCGTGCGAACTCAATTTGGTCGAGGGTTCCATGACCGTTTCAACCACCAGAAAGACTAGGGATCCCTATATCATCATCAAAGCTAGGGATCTCATCAAGCTTTTGTCACGGAGTGTTCCTGCTCCTCAGAAAAAAGCTAAGAAGTTTGGGAAGGGTAAATCTGAAGAAAATATAAATGCGGAGACATATATTATAGGATCATCAGAACAAGCATCGGGAAGGAAATCTAAAAAGCAAAAGTCTTAG 1965 0.4738 MAGALSLPTSSKSVTQTVNGSHRFVIQGYSLAKGMGVGKHIASDLFSVGGYHWAIYFYPDGKNPEDNSTYVSVFIALASEGTDVRALFELTLLDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRSILESSDFLKNDCLKINCTVGVVVSAIDCPQRNSINIPETDIGSQFGTLLDNMEGSDVTFDVAGEKFPAHKLVLAARSPEFRSKFFGGLVEEKNEIIVTDLEPKVFKAMLHFIYRDTLTEEVEMGSSTTTNDFPVSETLTGKLLAAADKYGLGRLRLMCESRLCKDISVNSVANILTLADDCHAAELKAVCLKFAAQNLAAVMRSDGFEHMKEKCPWLQAEILKTIAGCEDDNCSVVDKTQSVWAQLSDGGDTNGDLAEKMEDKKEKRQRRGKTLFCPLFQRFNGKFFRESGVSIFKYHSTTKHSSQGATAPATEPPRQPLQPPLSPSERLPQHDWSSPETLNLRPEKKAAMENHQEEENGAANEAEAPKEKRKGKHDKPKPWDDDPNIDHWKIDKFDPSWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKSSLKQFGVACELNLVEGSMTVSTTRKTRDPYIIIKARDLIKLLSRSVPAPQKKAKKFGKGKSEENINAETYIIGSSEQASGRKSKKQKS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01747 654 CDD MATH 20 153 IPR002083 GO:0005515
Cca05g01747 654 Pfam Krr1 KH1 domain 543 616 IPR041174 -
Cca05g01747 654 MobiDBLite consensus disorder prediction 437 524 - -
Cca05g01747 654 ProSiteProfiles BTB domain profile. 189 255 IPR000210 GO:0005515
Cca05g01747 654 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 18 157 IPR008974 GO:0005515
Cca05g01747 654 MobiDBLite consensus disorder prediction 381 402 - -
Cca05g01747 654 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 7 372 IPR045005 GO:0016567
Cca05g01747 654 SUPERFAMILY TRAF domain-like 17 158 - -
Cca05g01747 654 Gene3D K Homology domain, type 1 537 619 IPR036612 GO:0003723
Cca05g01747 654 SUPERFAMILY POZ domain 168 300 IPR011333 -
Cca05g01747 654 Gene3D Potassium Channel Kv1.1; Chain A 165 294 IPR011333 -
Cca05g01747 654 SMART BTB_4 189 300 IPR000210 GO:0005515
Cca05g01747 654 Pfam BTB/POZ domain 181 298 IPR000210 GO:0005515
Cca05g01747 654 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 7 372 - -
Cca05g01747 654 CDD BTB_POZ_BPM_plant 175 297 - -
Cca05g01747 654 CDD BACK_AtBPM-like 297 358 IPR034090 -
Cca05g01747 654 MobiDBLite consensus disorder prediction 479 524 - -
Cca05g01747 654 Gene3D - 299 374 - -
Cca05g01747 654 SMART math_3 24 136 IPR002083 GO:0005515
Cca05g01747 654 ProSiteProfiles MATH/TRAF domain profile. 19 153 IPR002083 GO:0005515
Cca05g01747 654 MobiDBLite consensus disorder prediction 388 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01747 Cca-Chr5 37051730 37062366 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca05g01747 BTB 1.3e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01747 K10523 - gmx:100806769 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01747 05 37051730 37062366 Cca05g01747 05 37051730 37062366 ECH