Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01740 ATGGTGGCAAAATCAATGGAGTTCTCATATCAAGAACTAGCCAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTTTATTATGCAGAACTGAGAGGCGAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCAACAGAATTTCTTTGTGAATTGAAGGTCCTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAGGGGTCTCTTTTCCTTGTATATGAATATATTGACAATGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGCCTTGGTCTAGTCGAGTGCAAATTGCGCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTGCCTGTGTATATCCACCGTGATGTAAAATCTGCAAATATACTAATAGACAAAAACTTCCGTGGAAAGGTTGCAGATTTTGGGTTGACCAAACTTATTGAAGTTGGAGGCTCCACGCTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGATTTAACTGCAAAATCAATGGAGTTCTCATATCAAGAACTAGCCAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTTTATTATGCAGAACTGAGAGGCGAGGCCAAGGATGGGATAGAGCCTACAAGGGCAGAAGTTTTTATATTAACTCATAAGAAACGTAAAGATGGAAAAACATTGGATAAGGAATCTGCAAAAATAGTGGATATGATGCAAGAAAAGTTGAACAGTGGTGAAACATCTAATACACAACCTATTGGCAATGTTGCTTGGAAAAGGGATGTATATTCCCAAGTGATGGGAGAAGAAAGGAGTGGCTATGTTCGTTGCTTAGGACTTGGTCCAACACCTTCTCAGCTATGGGGCAGTAAATCTTCCATTGGAAATATTCTTGGTAGCAATACATTTAATGGGATAATACAAAAGTTAGAGCAAGAGGTGAGAGAGTTAAAGAAGTCAAAGGAAAAACAAGATGAAGAGATGCATTTGATGAAACACATTCAAGATAAGTTAGCATCGCAATTATCTTCCATGACCCAAGTGTTTTATAAACATTTTCCCACAGAGTTACCTTTGGCTCTAAACTTTGGGAGTTCATTCGAACATGTCCTAGGTATTAATAATGGTTTTGAGCAGGAATATAAAGTTGAAAAAATTTCAACTCCTTATAGTAATATGTTTGAGGCAAGTGGTTCAATCAAGCGTGAGAACCATTTAGATAAAGCTTTTGAAAAAAATGCCCCTGTTAAAAAGATAATTGATTTGGGTACTCCTTCAAGTGGCTCTCCATCAACTATAGATGCATATGAGAGGATGTTTTCAACCATTCCAAAGTGTGCAAGATTTGGAAAGCTTTTCAAGAATGTGGACCCTAGAACCTGTGAAGAGAAGAAAAATATAGATTGTGTTGATGATGGAATTCAGCCAATAGAGACAAATCAAAAGAGTATGACTAAAGATGGTGACATCACTTCCTTGCTAAAGCTTCTTAGGAAAAATAATGATGAAGATGCTCGAAAACTAGCGGCAAAGACTTTGTTTGATAGGCAAATGTTGGAGGATTACTTCATTGGATAA 1656 0.3804 MVAKSMEFSYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLGQYLHGTGKDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGGSTLHTRLVGTFGYMPPDLTAKSMEFSYQELAKATNNFSLENKIGQGGFGAVYYAELRGEAKDGIEPTRAEVFILTHKKRKDGKTLDKESAKIVDMMQEKLNSGETSNTQPIGNVAWKRDVYSQVMGEERSGYVRCLGLGPTPSQLWGSKSSIGNILGSNTFNGIIQKLEQEVRELKKSKEKQDEEMHLMKHIQDKLASQLSSMTQVFYKHFPTELPLALNFGSSFEHVLGINNGFEQEYKVEKISTPYSNMFEASGSIKRENHLDKAFEKNAPVKKIIDLGTPSSGSPSTIDAYERMFSTIPKCARFGKLFKNVDPRTCEEKKNIDCVDDGIQPIETNQKSMTKDGDITSLLKLLRKNNDEDARKLAAKTLFDRQMLEDYFIG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01740 551 Coils Coil 326 353 - -
Cca05g01740 551 SUPERFAMILY Protein kinase-like (PK-like) 5 190 IPR011009 -
Cca05g01740 551 Pfam Plant transposase (Ptta/En/Spm family) 226 310 IPR004252 -
Cca05g01740 551 ProSitePatterns Protein kinases ATP-binding region signature. 26 48 IPR017441 GO:0005524
Cca05g01740 551 Gene3D Transferase(Phosphotransferase) domain 1 4 193 - -
Cca05g01740 551 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 185 - -
Cca05g01740 551 PANTHER - 2 185 - -
Cca05g01740 551 ProSiteProfiles Protein kinase domain profile. 20 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01740 551 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 187 228 - -
Cca05g01740 551 Pfam Protein tyrosine and serine/threonine kinase 21 187 IPR001245 GO:0004672|GO:0006468
Cca05g01740 551 PANTHER - 187 228 - -
Cca05g01740 551 SMART serkin_6 20 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01740 551 Gene3D Phosphorylase Kinase; domain 1 194 268 - -
Cca05g01740 551 SUPERFAMILY Protein kinase-like (PK-like) 190 242 IPR011009 -
Cca05g01740 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01740 Cca-Chr5 37010287 37016655 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01740 189 227 Receptor kinase-like Gene Family AT3G21630 82.051 1.67e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca05g01740 PK_Tyr_Ser-Thr 6.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01740 - K13429 ccaj:109796409 375.941