LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01733	ATGTCAGATGACATGCTCATTCATTTCTCATCCAACTCTTCCAACCAATCAGATCAGTCTCTGCCTACAAAGATTGCAAAATTGGAAGCTCGTATGGTTGGTAAGGGTTCCTCTGCCACTGCTCAGCAATCAGGTTGGTCTGCTATGTCAGTTCCTTCAGCTGGGAAATTTGGTGGAGCTGCTGAAGACTTGACTCAACCTTCCACTTCCAGTGATTCTGATGATGATAATGGTGGGGAATTTTTAATACAAGCCAACACACAGAAGCGCCAAAGACTTCATGAAGATGGTAGCGCTAGTGTTTTGGAACATGTCGAGGTTGCTACTGATGGAAGGCAAACTAGTTTGGAAGCAGTGGAGACAAAAATTAATGTTGATGTGAATAGAAAGAAACATGGCCGTGGAAGAGGGGGTTCTGGTTCAGGTAGAGGCCGTGGTTCTAGAGTTAATGATCAGACCAGAACACAGATTTCTCCTCCCATTGTTTTGGCTTCAAATGGTCAGATTGAGAATTTACACCATAAAGATGGCAGACTTGTTGATCAATTTCATAATGATAATTATGCTTCATTAGAGGAGGAGGTTGCATCTTTACAAGCAAAAGTTGTAGCATTGGAGGGGGAATTGCTTAAATCAAAGCAAGAATCTGCTGAATATCAGAATCTTTATCGACAGTTAGAAAAGGAACTGAAGGAGTTGACTGATCAAGAACAGCAAATGAAGCCTAAGAGAATGAAAATAATATCTGACTTGCTGATATCCGTTTCAAAGGCTGAGAGACAAGAAGCAAGGCTGAAAGTACGGCAAGACTCATTAAGACTTGGAAATGTTGGTGTAATCAGAGCTGGAACTGTCATTTCCGAGACCTGGGAAGATGGTCAAGCTTTAAAAGATCTGAATACCCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAATTGTTTAAGAAAAAACAATCTGATAAGGGTGATGGAACAGATGCAGAGGCTGGATTACCAGAAGATATTATAATTCATGATGAAATCTACAAATCTCGATTAGCTAGCCTTAAACGAGAAGAAGAAATTATTTTGCGGGAGAGGGACCGGTATGAATTAGAGAAGGGGAGGTTAATTCGTGAAATGAAACGTATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAACCATCGTTATGCCCTTCTTAACCTTCTTGGGAAGGGGGGATTCAGTGAAGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGCCATGCAATTCGGGAGTATAATATTCACAAGACTCTTGTACATCGTCACATTGTTCGTTTATGGGACATCTTTGAGATTGATCAAAACACATTCTGCACCGTTCTAGAGTATTGTAGTGGGAAGGATCTTGATGCTATCCTTAAAGCAACACCTATATTACCTGAGAGAGAGGCTAAAGtcatcatagttcagatttttcaaggccttatttacatgaataaaagaacacagaagattattcattatgatttgAAGCCTGGAAATGTTCTATTTGATGAGCTTGGTGTTGCCAAAGTGACTGATTTTGGTCTTAGTAAGATAGTCGAGGATGATGTGGGATCCCAAGGTATGGAACTTACATCTCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGATACCTCTTATATCATCAAAGGTTGATGTTTGGTCTGCTGGGATTTTGTACTATCAAATGCTCTTCGGTAAACGTCCTTTTGGGCATGACCAAACACAAGAGAGAATACTTCGTGAAGATACAATTATTAAGGCACGCAAGGTTGAATTTCCTTCTAGACCTACCGTATCTAACGAGGCAAAGGATTTTATTCGGAGGTGTTTAACATATAACCAGGCTGAGAGACCAGATGTATTAACCATTGCCCAAGACTCATATCTCACTTTCTCAAAGAAGTTGTAA	2043	0.3926	MSDDMLIHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSATAQQSGWSAMSVPSAGKFGGAAEDLTQPSTSSDSDDDNGGEFLIQANTQKRQRLHEDGSASVLEHVEVATDGRQTSLEAVETKINVDVNRKKHGRGRGGSGSGRGRGSRVNDQTRTQISPPIVLASNGQIENLHHKDGRLVDQFHNDNYASLEEEVASLQAKVVALEGELLKSKQESAEYQNLYRQLEKELKELTDQEQQMKPKRMKIISDLLISVSKAERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNTQLKQLIETKEAIERQRKLFKKKQSDKGDGTDAEAGLPEDIIIHDEIYKSRLASLKREEEIILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAILKATPILPEREAKVIIVQIFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKIPLISSKVDVWSAGILYYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYNQAERPDVLTIAQDSYLTFSKKL	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g01733	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	527	539	IPR008271	GO:0004672\|GO:0006468
	Cca05g01733	680	ProSiteProfiles	Protein kinase domain profile.	401	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g01733	680	Coils	Coil	352	386	-	-
	Cca05g01733	680	Pfam	Protein kinase domain	402	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g01733	680	MobiDBLite	consensus disorder prediction	1	80	-	-
	Cca05g01733	680	MobiDBLite	consensus disorder prediction	36	50	-	-
	Cca05g01733	680	SMART	serkin_6	401	674	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g01733	680	PANTHER	BNAC09G36930D PROTEIN	1	679	-	-
	Cca05g01733	680	MobiDBLite	consensus disorder prediction	128	153	-	-
	Cca05g01733	680	MobiDBLite	consensus disorder prediction	1	23	-	-
	Cca05g01733	680	Coils	Coil	296	323	-	-
	Cca05g01733	680	CDD	STKc_TLK	400	673	-	-
	Cca05g01733	680	Coils	Coil	181	243	-	-
	Cca05g01733	680	SUPERFAMILY	Protein kinase-like (PK-like)	393	675	IPR011009	-
	Cca05g01733	680	ProSitePatterns	Protein kinases ATP-binding region signature.	407	430	IPR017441	GO:0005524
	Cca05g01733	680	PANTHER	MIXED LINEAGE PROTEIN KINASE	1	679	-	-
	Cca05g01733	680	MobiDBLite	consensus disorder prediction	63	80	-	-
	Cca05g01733	680	Gene3D	Transferase(Phosphotransferase) domain 1	392	679	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01733	Cca-Chr5	36920419	36927442	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g01733	384	679	MAP Kinase Kinase Kinase	AT3G13530	27.425	9.12e-28	118

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Cca05g01733		Pkinase	6e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g01733	K08864		-	gmx:100789927	1214.52