Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01725 ATGTTCCTCTCTTATCCAATGGAACTCAAAAAAGGTTTACTGTTTTTGTTGTTGTTGGAGTGTGTTTTTTGCGATGTGGAATCCATGTGTGTGAAGGAATGTGATGTAGCTTTAGCTTCCTACTATATCCTTCCAGGATATTTAACCGTAGAAAACGTAACGGGCTGGCTGGAATCAAGCGTTTTGTCAAATTCTGACGTTATAAAAAGCTACAATAAAGACAAAATAATCAAGGATAATCTACCATCCTTTGATAGAATCAATGTTCCATTCCCCTGTGACTGTATTCATGAAGAATTTCTGGGGCATGTGTTTGAGTACTCAGCTGCTGCAGGTGACACCTATGATTCGATTGCCAAAGTGACATATGCAAATCTCACCACTGTTGAGCTTTTGACGAGGTTCAACAGTTATGGCCACGATATACCTCAAAATGCCAAGATTAATGTGACTGTCAAGTGTTCTTGTGGGAACAGCCAGGTTTCAAAAGATTATGGGTTGTTTATTACCTATCCGCTCAGGCCTGGGAATAATTTGCATGATATTGCCAACGAGGTTCATCTTGATGCACAGTTGCTAGAGAAATACAATCCTGGTGTCAATTTCAGCAAAGACAGTGGAATTGTTTTCATTCCAGGAAGAGATCAAAATGGAGACTACGTTCCCTTGTACCCTAGAAAAGCAGGCGGAATTAAAAAAAAAATCAGTGCCAAGGATGCTGCTGTTGGAGTATCTATAGCAGGAATATGCGGTCTTCTGTTATTAGTAGTTTGCATATATGTTAAATACTTACAGAAGAAAGAAGGAGAGGAAGTTAAATTGCCAACAGAAAGTTCTATGGCGTTTTCAACTCAAGATGCCTCTGGAAGTTCAGAATACGAAACTTCAGGATCCAGTGGACCTACTACTGCTAGTGCTACTGGCCTCACAGGCATTATGGTGGCAAAATCAATGGAGTTCTCATATCAAGAACTAGCCAAGGCTACAAATAACTTCAGCTTGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTTTATTATGCAGAACTGAGAGGCGAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCAACAGAATTTCTTTGTGAATTGAAGGTCCTAACTCACGTTCATCACTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAGGGGTCTCTTTTCCTTGTATATGAATATATTGACAATGGAAACTTAGGCCAATATTTGCATGGTACAGGGAAAGATCCTTTGCCTTGGTCTAGTCGAGTGCAAATTGCGCTAGATTCAGCAAGAGGCCTTGAATATATTCACGAGCACACTGTGCCTGTGTATATCCACCGTGATGTAAAATCTGCAAATATACTAATAGACAAAAACTTCCGTGGAAAGGTTGCAGATTTTGGGTTGACCAAACTTATTGAAGTTGGAGGCTCCACGCTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTTTCTCCAAAAGTAGATGTATATGCTTTTGGAGTTGTTCTTTATGAACTTATTTCTGCAAAGAATGCTATTCTGAGGACAGGTGAATCTGTTGCTGAAACAAAGGGCCTTGTAGCTTTGTTTGAAGAAGCACTTAATCAGAGTAATCCTGGAGAAGGTATTCGCAAATTGGTGGATCCTAGGCTTGGAGAAAACTACCCAATAGATTCAGTTCTCAAGATTGCCCAACTAGGAAGAGCTTGTACAAGAGATAATCCACTACTGCGCCCAAGTATGAGGTCTATAGTTGTTGCTCTCATGACACTTTCATCACCTACCGAGGATTGCGAGGATGGCGCTTCCTATGAAAATCAAACTCTCATAAATCTACTATCTGTCAGATGA 1893 0.4036 MFLSYPMELKKGLLFLLLLECVFCDVESMCVKECDVALASYYILPGYLTVENVTGWLESSVLSNSDVIKSYNKDKIIKDNLPSFDRINVPFPCDCIHEEFLGHVFEYSAAAGDTYDSIAKVTYANLTTVELLTRFNSYGHDIPQNAKINVTVKCSCGNSQVSKDYGLFITYPLRPGNNLHDIANEVHLDAQLLEKYNPGVNFSKDSGIVFIPGRDQNGDYVPLYPRKAGGIKKKISAKDAAVGVSIAGICGLLLLVVCIYVKYLQKKEGEEVKLPTESSMAFSTQDASGSSEYETSGSSGPTTASATGLTGIMVAKSMEFSYQELAKATNNFSLENKIGQGGFGAVYYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLGQYLHGTGKDPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNFRGKVADFGLTKLIEVGGSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAILRTGESVAETKGLVALFEEALNQSNPGEGIRKLVDPRLGENYPIDSVLKIAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCEDGASYENQTLINLLSVR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01725 630 SMART serkin_6 332 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01725 630 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 630 IPR044812 GO:0019199|GO:0045087
Cca05g01725 630 Gene3D Phosphorylase Kinase; domain 1 312 402 - -
Cca05g01725 630 Pfam Protein tyrosine and serine/threonine kinase 333 599 IPR001245 GO:0004672|GO:0006468
Cca05g01725 630 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Cca05g01725 630 Gene3D Transferase(Phosphotransferase) domain 1 403 624 - -
Cca05g01725 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Cca05g01725 630 SUPERFAMILY Protein kinase-like (PK-like) 313 602 IPR011009 -
Cca05g01725 630 MobiDBLite consensus disorder prediction 275 304 - -
Cca05g01725 630 MobiDBLite consensus disorder prediction 277 304 - -
Cca05g01725 630 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 14 630 - -
Cca05g01725 630 ProSiteProfiles Protein kinase domain profile. 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01725 Cca-Chr5 36825080 36829702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01725 7 630 Receptor kinase-like Gene Family AT3G21630 55.151 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca05g01725 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01725 - K13429 gmx:100792559 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01725 05 36825080 36829702 Cca05g01725 05 36825080 36829702 ECH
Cca09g00565 09 14730479 14741074 Cca05g01725 05 36825080 36829702 PCT