Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01715 ATGCCAACAGGCTATAGAGCCAAGAGCCCAAAAATCCCTATTGTTCTGACTGACCATCCATTTAGTGCTCTTTTTGAGAAAACAGTAAGGTGGGGACTAGGAACAACTGATCCCAGCCAAAGAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTTCGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTCAGTAACAACCCTGGTCCCCAAATGCACAGTGATAATAGAAGGGTACCTGTCACTGCTAGCAATAGCATCGCTCAGGATCATCACTACAGCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGCCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCCAAGTGTGAATCCTTGAATGCATCATCAGGAAGGACAGGAAGTGGTTCAATAGGTGAAGATCCAGCTCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTTATTAAGTACGAGCAAGAGCTCACAAAACCCTTTAAGGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCTTCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGATTCTCAAGCTGAAGATCGTGAACTCAAAGTCCAGCTTTTGCGCAAGTATAGTGGATACCTAGGGAGCCTGAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGCCAACAACTACTTGATTGGTGGAACAGGCATTACAAATGGCCTTACCCTTCGGAGTCACAAAAGCAGGCTCTTGCAGAATCCACAGGCCTAGATCTGAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCTGTGATGGATGCAACTAACTACTATATGGAAAACAAAAAGCAGGATGAAAATCCACGTTATCCTGAACTGCAATCTATGTTAGGGGTTTTCGATTTTGAAGTATTGGTAGCAGCTTGCAACAGAACAGAGCCAAACACTTGCATCGGTGGTTGTTCTTCGCTCACGCCTCACGCTGAAGGCATGAATGCGTTCAAGGCATACAAGGCCTGTGTGCCAATTGCTTGGAGCCCCAATCTCTATATAACACTGGTGAGGGGCATTCCGGGAACCAGGAAGCTACATAGGCGCACTTTGGAAGCACTTCGCCTGCGCAAATGCAATCGAACTGTCATGCGATGGAACACACCTACAGTTAGGGGAATGCTCCAACAGGTCAAGAGGTTAGTTGTTGTCGAGACAGAGGAAATGTACAAGGCCCGCAAGCAGAAGGAGCAAGCACACCGAGCTATTCGTCCTCCATTGGTCATAAGTCACAAACCTCCCTCGCTCACTGATGCTTTATAA 1500 0.46 MPTGYRAKSPKIPIVLTDHPFSALFEKTVRWGLGTTDPSQRGFGGNSCSELSSMDMMNMETNRKFLSLPLSNNPGPQMHSDNRRVPVTASNSIAQDHHYSHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESLNASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENKKQDENPRYPELQSMLGVFDFEVLVAACNRTEPNTCIGGCSSLTPHAEGMNAFKAYKACVPIAWSPNLYITLVRGIPGTRKLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLVVVETEEMYKARKQKEQAHRAIRPPLVISHKPPSLTDAL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01715 499 Pfam Ribosomal protein L30p/L7e 412 461 IPR016082 -
Cca05g01715 499 SUPERFAMILY Ribosomal protein L30p/L7e 411 464 IPR036919 -
Cca05g01715 499 SMART HOX_1 264 329 IPR001356 GO:0003677
Cca05g01715 499 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 42 349 - -
Cca05g01715 499 Pfam ELK domain 242 263 IPR005539 GO:0003677
Cca05g01715 499 Pfam Homeobox KN domain 282 321 IPR008422 GO:0003677|GO:0006355
Cca05g01715 499 ProSiteProfiles 'Homeobox' domain profile. 262 325 IPR001356 GO:0003677
Cca05g01715 499 Hamap 50S ribosomal protein L30 [rpmD]. 408 465 IPR005996 GO:0003735|GO:0006412|GO:0015934
Cca05g01715 499 CDD Ribosomal_L30 411 464 IPR005996 GO:0003735|GO:0006412|GO:0015934
Cca05g01715 499 Gene3D - 260 333 - -
Cca05g01715 499 ProSiteProfiles ELK domain profile. 242 262 IPR005539 GO:0003677
Cca05g01715 499 SMART ELK_2 242 263 IPR005539 GO:0003677
Cca05g01715 499 SMART KNOX1_2 108 152 IPR005540 GO:0003677|GO:0005634
Cca05g01715 499 Pfam KNOX1 domain 110 151 IPR005540 GO:0003677|GO:0005634
Cca05g01715 499 TIGRFAM rpmD_bact: ribosomal protein uL30 411 464 IPR005996 GO:0003735|GO:0006412|GO:0015934
Cca05g01715 499 ProSitePatterns 'Homeobox' domain signature. 300 323 IPR017970 GO:0000981|GO:0006355
Cca05g01715 499 Pfam KNOX2 domain 164 210 IPR005541 GO:0003677|GO:0005634
Cca05g01715 499 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
Cca05g01715 499 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 349 - -
Cca05g01715 499 SUPERFAMILY Homeodomain-like 264 336 IPR009057 -
Cca05g01715 499 CDD homeodomain 274 326 IPR001356 GO:0003677
Cca05g01715 499 Gene3D - 409 491 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01715 Cca-Chr5 36742463 36754803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01715 110 343 Homeobox Transcription Factor Family AT1G62360 68.952 3.78e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Cca05g01715 Ribosomal_L30 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01715 - - gmx:100791704 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01715 05 36742463 36754803 Cca05g01715 05 36742463 36754803 ECH