Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01713 ATGGCCACCATCCAGTGCGCCGCGACCACCATActcctcctcctcctcttcacatcctccatccCAAAATCACACTCCCAACAAGAGTACGTAAACAACAAGCAACTAGACTGCGACAACGAATTCAACTCCACAAAAGGAAACATCTGCAACGGTGTTTCTACCTCTTGCACTTCATACCTCACCTTCAAATCATCCCCACCCGAATACGCTACACCCTCCTCCATCTCATACCTCCTCAATTCCACCCCCTCCCTCATCGCCGCCGCCAACAACATCACCGACGTCGAGTCCGTCGCCGCCGACACCCTCCTCACCGTGCCCATCAACTGCTCCTGCTCCGGCCCCTACTACCAGCACAACGCCTCCTACTCCATCAAGATCCTAGGCGAAACCTACTTCACCATCGCCAACAACACCTACCAGTCCCTCACCACGTGTCAAGCCCTCAGGGCCCAAAACCGCTTCAACGATCGCAACCTCACCAAAGGTCTCAACTTGCACGTGCCCCTCAGGTGCGCCTGCCCCACGGAGAAACAGCGGCAAGCAGGCTTCAACTACTTGCTCACTTCCTTTGAAGACAGAGCCACCCGCGAAAATACAGAGAGGAGCAACTCCGCCGGAGGATTCTccgctgccgccgccgccgcctcccccggcggcgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTccgctgccgccgccgcctcctccgGCAGCGGACGGAGATTCTGACTCTTCCAAGAAATGGGTCATTGTAGGAATCGTGGTTGGGGTTGTTCTGTTGCTTCTTGTGGGTGTTGCTCTGTTTTTCCTCTGCCGGAGGCAGAGGAAAAAGAAAAACGAAGCAACACCACCGGCGAAGCCTTTCTCGGCTTCTACCACGACGGAGACAAGTAAAAAGGTGTTGGATTCTATTCCAACGTCGCAATCATGGTCTCTTTCTTCGGAAGGAGTTCGCTACATGATTGAGTCGGTGAGTGTGTACAAGTTCGAGGAGTTGCAGCAGGCGACGGGGTTCTTCAGTGAAGAGAATAAGATAAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATCATGCTGCGGTGAAGGTTCTCAAAGGGGATGTGTCTGGCGAGATTAACATTCTGAAGAGGATTAACCACTTCAACATTATAAGGTTGTCTGGTTTTTGTGTTTACAAAGGCGACACTTATCTTGTGTACGAGTTCGCGGAGAATGATTCTCTCGAGGATTGGCTTCACAATGATAGTAAGAAGTACGTGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCAGATTGCTCATGATGTTGCTGATGCTCTTAACTACCTTCATAATTACACTAGTCCTCCTCATGTGCATAAGAATTTGAAGAGTGGGAATGTGCTTTTGGATGGGAATTTTAGGGCTAAGATTTCGAATTTTGGGTTGGCGAGAGCTGTGGAGGATCGAGGGGATGATGGGGGGTTTCAATTGACGAGGCATGTGGTGGGGACTCAAGGGTACATGGCTCCTGAGTATATTGAAAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCATTTGGGGTTGTGGTTTTGGAGCTTCTTTCTGGGAGAGAGGCTATTGTTAGGGATAAGAATGGAACTGGGCAGCAAATGCTGTCGGGAATTGTGAATCAGGTGCTTGAAGGAGAAAATGTTAGGGAGAAACTTGGAGGTTTCATGGATCCAAACTTGAGGGGTGAGTATCCTTTAGATTTGGCTTACTCCATGGCCGAGCTTGCCAAACTCTGTGTTGCTCATGACCTCAATTCCAGGCCACAGATTTCTGAAGTTTTCATGACTTTGTCCAAGATTCAATCCTCTTCGTTGGATTGGGATCCGTCTGATGATCTTGAACGGTCTAGATCTGTTAGCCAAACATCTGATAGCAGATATAGATGA 2004 0.4416 MATIQCAATTILLLLLFTSSIPKSHSQQEYVNNKQLDCDNEFNSTKGNICNGVSTSCTSYLTFKSSPPEYATPSSISYLLNSTPSLIAAANNITDVESVAADTLLTVPINCSCSGPYYQHNASYSIKILGETYFTIANNTYQSLTTCQALRAQNRFNDRNLTKGLNLHVPLRCACPTEKQRQAGFNYLLTSFEDRATRENTERSNSAGGFSAAAAAASPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPPPPPPAADGDSDSSKKWVIVGIVVGVVLLLLVGVALFFLCRRQRKKKNEATPPAKPFSASTTTETSKKVLDSIPTSQSWSLSSEGVRYMIESVSVYKFEELQQATGFFSEENKIKGSVYRASFKGDHAAVKVLKGDVSGEINILKRINHFNIIRLSGFCVYKGDTYLVYEFAENDSLEDWLHNDSKKYVNSVSLSWVQRVQIAHDVADALNYLHNYTSPPHVHKNLKSGNVLLDGNFRAKISNFGLARAVEDRGDDGGFQLTRHVVGTQGYMAPEYIENGLITPKMDVFAFGVVVLELLSGREAIVRDKNGTGQQMLSGIVNQVLEGENVREKLGGFMDPNLRGEYPLDLAYSMAELAKLCVAHDLNSRPQISEVFMTLSKIQSSSLDWDPSDDLERSRSVSQTSDSRYR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01713 667 PANTHER PROTEIN LYK5 256 656 - -
Cca05g01713 667 Gene3D Transferase(Phosphotransferase) domain 1 429 658 - -
Cca05g01713 667 ProSiteProfiles Protein kinase domain profile. 344 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01713 667 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 256 656 - -
Cca05g01713 667 MobiDBLite consensus disorder prediction 647 667 - -
Cca05g01713 667 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 14 190 - -
Cca05g01713 667 SUPERFAMILY Protein kinase-like (PK-like) 332 633 IPR011009 -
Cca05g01713 667 MobiDBLite consensus disorder prediction 221 268 - -
Cca05g01713 667 PANTHER PROTEIN LYK5 14 190 - -
Cca05g01713 667 Gene3D Phosphorylase Kinase; domain 1 329 428 - -
Cca05g01713 667 Pfam Protein kinase domain 387 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01713 Cca-Chr5 36725923 36728054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01713 3 658 Receptor kinase-like Gene Family AT2G33580 49.341 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca05g01713 Pkinase 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01713 - - gmx:100818534 641.343