Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01708 ATGGTGTCCACAAAGCTTGTATCGTTTCAGTTGATTTTCATCACATTCTTGTGTTCACTTTTAAGCCTCTGTTCCACACAAGTTTCTGGTGTTTCTTTTGCCAATGCTATTGTCAAGGTTGGCCATGAAGCCGCACAAGATGAAGACATTGAAGCAAGTGCTCTATTAAAGTGGAAAGCCAGTTTTGATAACCAAAGTCAGGCTTCTTTGTCTTCTTGGTCCAATATTACTAGTCCTTGCAAGTGGGAAGGAATTGTTTGTGATGAATCCAACTCTATCAGCACTATAGATGTTACAAATTTTGGTCTAAAAGGTACACTTCTCAGTCTTAATTTCTCATCCTTTCCTAAGTTGTTGAGTCTAAAGTTGAGTTACAACTCCTTGAGTGGACCTATTCCCCACCAAATTGGCAAACTGTCAAGAATTTCTCAGTTGAAAATGGATCATAATTGTTTCAGTGGTTTCATCCCCCAAGAAATAGGGGCATTGCATAACTTGGAGTATCTATCCATGAGAGCAAATAGTCTTTTTGGTTCCATCCCCAAAACAATTGGAATGTTGAAAAATCTTGTCATGCTTGATTTGTCATCCAACTCTCTGTCTGGTGCAATCCCTTCATTTTCAAATACCAACTTGACAAATTTAGAACAACTTATCCTCTTTAACAACCTTCTCTCTGGCTCTATTCCTGAGGAGTTGGGAAGACTTCATTCTCTCACAACAATCAAACTGTTAGAAAACAATCTTTCCGGGCCAATCCCTTCTTCCATTGGAGACTTGGCTAATTTGAGAACACTTCAGCTCAGTTGTAATAAATTTGATGGATCAATTCCTTCCACCTTTGGAAACTTGACAAAACTCATTGAATTGTCCATGATGGAAAACAACCTTTCTGGATCAATTCCTGCTTCCATAGGAAACTTGGTCAATCTGGAGAAGCTTGGCCTTGCAATGAACAATCTTTCTGGACCTATTCCCTCTTCCTTTAGAAATTTGACAAAGCTCACCTTCTTATTACTTTATATGAACAACCTTAATGGTAGTTTTTCAACAGCAATAAATAACCTTACTAGTCTAGTAAGCTTACAACTAAGCTTGAATCATTTCACTGGCCCTTTGCCACCACATATATGCCTTGGAAGGTCACTTTCAAATTTTTCTGCCAATCAAAATCATTTCACAGGTACAATTCCAACAAGTTTGAAGAACTGCTCTAGCCTTTTTAGGCTCAACCTTGCAGACAATAATTTGACAGGAAATATTTCAAATGATTTTGGTGCATATCCAAAGTTGAGCTACATTGATCTGAGATACAATAACTTTTATGGCCACCTTTCATCAAATTGGGCCAAAAGCCATAATCTCACAACTCTTAAGATGTCCAACAACAATTTAAGCGGTGGTATACCGCCAGAACTTGGTCAGGCACCCAAGTTAGAGCAACTTCATTTGTCTTCAAATCATTTAACTGGAAAATTTCCAAAAGAACTTGGTAACTTGACCTCATTGTTTGATCTATCAATAAGCAACAATGAACTTTTTGGCAACATTCCTTCAGAAATAGGTGCTCTATCTCACCTTCAAAATTTGGATCTTGCAGCAAATAATTTAGGTGGCCCAATTCCAAAACAGATGGGAGAGTTGCTCAATTTACTTCACTTGAACTTGAGCAAGAATAAATTCACAGAAAGCATTCCTTTCTTCAACAAATTGCAATCTCTGCAAGATCTTGATCTTAGTTGGAATTTGTTAAATGGAGAAATACCGGCAACACTTGCATGTATGCGAAGATTGGAAACGTTAAACCTCTCACACAATAATCTCCATGGAGTCATTCCATCTAGTTTTAAGGATATGATTAGCTTGACAAATGTTAACATATCCAACAACCAATTAGAGGGTTCAATTCCTAACAATCAAGCTTTTTTTAAGGCTCCATTTGATGCATTGAAAAATAACAAAGGCTTGTGCGGTAATGCTTCCGGGTTGGTGCCTTGCACAAAGTTTAGTCCCAATTCTCATGGTAAAAAGAGAAATATCATCATGTTGAAACTATTCCTTATTTTGGGTTCATTATCGCTAGTAGTGTGTGCAGTTGGAGTTTCATTATATATTCATTGGCAAAGAGCAAGAAAAATCAAAAAACAGGCCGGAGAAGAACAAAGTCCAGATCTTTTTTCCATATGGCATTATGATGGAAAAATAGTGCATGAAAATATCATTGAAGCAACAGAGGATTTTGATGACAAATATCTCATTGGAGAAGGAGGGTTTGGAGCTGTTTACAAGGCTATGTTACCCTCTGGCCAAATTGTTGCTGTGAAAAAACTTCACGTTGAAGTTGACAGGGAAACACTTAATTTTAAGGCTTTTACAACTGAAGTTCGAACCTTGACAGAAATCAAACATCGTAACATTGTGAAGTTGCGTGGATTTTGTTCACATCCACGCTACTGTTTTTTGGTTTATGAGTTCCTAGAAGGTGGTAGCTTGGACAAAGTACTAAACAACGACACACAAGCAGTAATGTTTGATTGGAATAAGAGGGTTAACATTGTTAAAGGTGTAGCAAATGCTTTGTATCATATGCACCATGGTTGCTTTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAGGTTTGGATAATGAAGCCCGCATCTCGGATTTTGGAACAGCTAAAATTCTGAATCCTGATTCACGCAATTTCACCTCGTTTGCAGGCACTTATGGGTATGCTGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGGGTTCTTTGTTTGGAAATAATAATTGGAAATCATCCGGGAGATATCATTTATTGGATGTATTCACCCTCTTCAACACCAAGAATGTCCAATTTGCTATTGAAGGATGTGTTGGACCAACGACTTCCTCTTCCAATGAGGCCAGTTGCTAAGGAGGTCGTCTTGATTGCAAAGATAGCATTTGCTTGCTTGACTGAAAGACCACTTTCTCGACCAACCATGGAAGATGTGCACAACATGTTTGTGATGCCTAAATCACCTTTAATGAAGGAGACACTCGACACCATTGCACTTGGACACCTTCAAAATTGTTGA 3123 0.3804 MVSTKLVSFQLIFITFLCSLLSLCSTQVSGVSFANAIVKVGHEAAQDEDIEASALLKWKASFDNQSQASLSSWSNITSPCKWEGIVCDESNSISTIDVTNFGLKGTLLSLNFSSFPKLLSLKLSYNSLSGPIPHQIGKLSRISQLKMDHNCFSGFIPQEIGALHNLEYLSMRANSLFGSIPKTIGMLKNLVMLDLSSNSLSGAIPSFSNTNLTNLEQLILFNNLLSGSIPEELGRLHSLTTIKLLENNLSGPIPSSIGDLANLRTLQLSCNKFDGSIPSTFGNLTKLIELSMMENNLSGSIPASIGNLVNLEKLGLAMNNLSGPIPSSFRNLTKLTFLLLYMNNLNGSFSTAINNLTSLVSLQLSLNHFTGPLPPHICLGRSLSNFSANQNHFTGTIPTSLKNCSSLFRLNLADNNLTGNISNDFGAYPKLSYIDLRYNNFYGHLSSNWAKSHNLTTLKMSNNNLSGGIPPELGQAPKLEQLHLSSNHLTGKFPKELGNLTSLFDLSISNNELFGNIPSEIGALSHLQNLDLAANNLGGPIPKQMGELLNLLHLNLSKNKFTESIPFFNKLQSLQDLDLSWNLLNGEIPATLACMRRLETLNLSHNNLHGVIPSSFKDMISLTNVNISNNQLEGSIPNNQAFFKAPFDALKNNKGLCGNASGLVPCTKFSPNSHGKKRNIIMLKLFLILGSLSLVVCAVGVSLYIHWQRARKIKKQAGEEQSPDLFSIWHYDGKIVHENIIEATEDFDDKYLIGEGGFGAVYKAMLPSGQIVAVKKLHVEVDRETLNFKAFTTEVRTLTEIKHRNIVKLRGFCSHPRYCFLVYEFLEGGSLDKVLNNDTQAVMFDWNKRVNIVKGVANALYHMHHGCFPPIVHRDISSKNVLIGLDNEARISDFGTAKILNPDSRNFTSFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIIGNHPGDIIYWMYSPSSTPRMSNLLLKDVLDQRLPLPMRPVAKEVVLIAKIAFACLTERPLSRPTMEDVHNMFVMPKSPLMKETLDTIALGHLQNC 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01708 1040 Gene3D Phosphorylase Kinase; domain 1 708 825 - -
Cca05g01708 1040 Gene3D Ribonuclease Inhibitor 48 209 IPR032675 -
Cca05g01708 1040 ProSitePatterns Protein kinases ATP-binding region signature. 753 776 IPR017441 GO:0005524
Cca05g01708 1040 Gene3D Ribonuclease Inhibitor 331 673 IPR032675 -
Cca05g01708 1040 PRINTS Leucine-rich repeat signature 190 203 - -
Cca05g01708 1040 PRINTS Leucine-rich repeat signature 595 608 - -
Cca05g01708 1040 SMART LRR_typ_2 500 524 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 115 139 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 260 283 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 356 380 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 212 236 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 595 618 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 308 331 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 548 570 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 187 211 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 571 594 IPR003591 -
Cca05g01708 1040 SMART LRR_typ_2 453 476 IPR003591 -
Cca05g01708 1040 Pfam Protein kinase domain 749 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01708 1040 SMART LRR_sd22_2 187 217 - -
Cca05g01708 1040 SMART LRR_sd22_2 332 358 - -
Cca05g01708 1040 SMART LRR_sd22_2 500 532 - -
Cca05g01708 1040 SMART LRR_sd22_2 571 603 - -
Cca05g01708 1040 SMART LRR_sd22_2 163 182 - -
Cca05g01708 1040 ProSitePatterns Tyrosine protein kinases specific active-site signature. 871 883 IPR008266 GO:0004672|GO:0006468
Cca05g01708 1040 SUPERFAMILY L domain-like 62 379 - -
Cca05g01708 1040 ProSiteProfiles Leucine-rich repeat profile. 597 618 IPR001611 GO:0005515
Cca05g01708 1040 ProSiteProfiles Protein kinase domain profile. 747 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01708 1040 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 10 1037 - -
Cca05g01708 1040 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Cca05g01708 1040 Pfam Leucine rich repeat 567 608 IPR001611 GO:0005515
Cca05g01708 1040 Gene3D Transferase(Phosphotransferase) domain 1 826 1027 - -
Cca05g01708 1040 SUPERFAMILY RNI-like 325 637 - -
Cca05g01708 1040 Gene3D Ribonuclease Inhibitor 210 260 IPR032675 -
Cca05g01708 1040 Gene3D Ribonuclease Inhibitor 261 330 IPR032675 -
Cca05g01708 1040 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 10 1037 - -
Cca05g01708 1040 SUPERFAMILY Protein kinase-like (PK-like) 733 1017 IPR011009 -
Cca05g01708 1040 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01708 Cca-Chr5 36674812 36678077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01708 51 919 Receptor kinase-like Gene Family AT4G08850 45.907 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca05g01708 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01708 - - gmx:100800924 1472.6