Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01706 ATGGCCTTCACTAAGCTATTATTATTTCGTCTAATTCTCTGTTCACTTTTATGTCTTGATTCCTCCCAAGTTCTTAAAGTTTTCACCTTTTCTTCCTTTGCCTTTGTTCCGATCTCTGCTTATGAAGTTGCGGAAAACCAAGAGAGGGAAGCAAGTGCTTTATTTGAGTGGAGAGTGAGCCTTGACAACCAAAGCCAAGCCTCTCTTTCTTCATGGACCACTCGTGTAAGTCCTTGCAAGTCATGGAAAGGAATTGTTTGTGACAATTCCAACTCTGTCACCGATATTAATGTTACAAACTTTGGACTAAAAGGTACTCTTCACAGTCTCAACTTCTCATCTTTTCCCAAGTTGCTTAGTCTTGATATTAGTAACAACAGTTTTAGTGGAACTATTCCTCCACAAATTGCTAACTTATCCAGAGTTTCTCAATTGAAAATGGATGATAATCTCTTTAGTGGTTCAATCCCTGAAGAGATTGGAGAATTGCGGAACTTGAAGCAGCTAATACTAGCAAAAAATCAACTTTCTGGCACCATTCCTCCAACAATTGGAATGTTGGCAAATCTTGTTAAACTTGACTTGTCAAAAAACTCTATCTCTGGGACAATTCCTTCGATTAGAAACTTGACAAATATACAACTCCTTAGGCTCTCAAACAATACTCTCTCTGGCTCCATTCCACCCTACATAGGAGACTTGGTCACTTTGACTGACTTTGAAATCCAGAATAATAGTATTTCAGGGTCCATTCCTTCCAATATTGGAAACTTGACAAAGCTGGTCAACTTTTACATTCCCCTAAACATGATTTCTGGATCCATTCCTAACACCATCGGAAACTTGGTCAATCTATATGCATTGGACCTTTCTAGGAACAATCTTACTGGAGTTATTCCTTCCAGCCTAGGAAATTTGACAAACCTTGTCTTTTTGTTATTGTTTAATAACACACTTCAAGGTAGATTACCACCAGGATTGAATAACTTTACCAATTTTCAGAGCTTACAACTATCTTCAAATAGTTTCACTGGTCCTTTGCCACAACAAATTTGTCTTGGTGGGTCATTGAGAAAATTTGCTGCCAACTCTAATTATTTCACGGGTCCAGTTCCAAAAAGCCTGAAAAATTGCTCTAGTCTTACCAGAGTTAACCTATCAGGAAACCAGTTGAGCGGAAATATCTCAGATGATTTTGGTGTATATCCAAATTTGACCTTTGTTGAGTTGAGTAGCAATAATTTTTATGGCCACATTTCACCAAATTGGGCAAAATGTCCTAATCTCACAAGCCTTAAGATGTTCAACAACAATTTAAGCGGTGGTATACCGCCAGAACTTGGCCACGCACCCAAATTAGAAATACTTGATTTGTCTTCAAATCATCTAACAGGAAAAATTCCAGAAGAACTTGGGAACTTGACCTCATTGTTTGATCTGTCAATAAGTGACAATGAACTTTATGGCAACATTCCTACACAGATAGGTGCTTTGTCCCGCCTTCAAAATTTGGAGCTTGCAGCAAATAATTTTGGTGGCCCAATTCCAAAACAGGTGGGAGAATTGCTCAATTTACTTCACTTGAACTTGAGCAAGAATAAATTCAGAGGAAGAATTCCTTCGTTTATCCAATTGCAATCTCTTGAAGATCTTGATCTTAGTTGGAATTTGTTAAATGGAGAAATATCAGTGGCACTTGCAAGTATGCAAAGATTGGAAACACTAAACCTCTCCCACAATAATCTCTCTGGAGCCATTCCATCTAGTTTTAAGGACATGATTAGCTTGACAAATGTTAACATATCCAACAACCAATTAGAGGGTTCAATTCCTAACAATCCAGCTTTTCTTAAGGCTCCATTTGATGCATTGAAAAATAATAAAGGCTTGTGTGGAAATGCCTCTGGATTGGTGCCTTGCCCAGAGTTGAGTCACAGTGGTAAAATGAAAAGAAAAGCCATCATGTTGGCATCATTCCTTACTTTGGGTGCTTTGTTTCTATTAGTATTCACGACTGGAGTTTCGTTGTGTATTTATTATCGAAGAGCGACAAAAGCCAAAAAGGAGGAGGCTAAAGAAGAAAAAGTGGAGGATCATTTTGCCATATGGAGTTATGATGGAAAAATATTGTATGAAAATATCATTGAAGCCACAGAGGGGTTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGCATATGTTTATAAGGCAAAATTATCCACAGGACAAATTGTTGCTGTCAAAAAACTTCATGAGGTATCCGACGAGGAAACACTCAATTTAAAAGCTTTTACAAATGAAGTGAAAGCCTTGGCAGAAATAAAGCATCGTAACATTGTGAAGTCATTAGGATATTGTTTACATCCACGTTTCACCTTTTTGATTTACGAGTTCCTAGAAGGGGGTAGCTTGGATAAAGTACTAAACAATGATATGCATGCAACAAAGTTTGATTGGAACAAAAGGGTGAAGGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATGCATCATGGTTGCTTTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAATATACTTATAGATTTGGATTATGAAGCCCGCATCTCTGACTTCGGAACAGCTAAAATTCTAAATCCTGATTCACACAATTTAACCGCGTTTGCTGGAACCTATGGGTATTCTGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTGTTTAGTTTTGGAGTGCTTTGTTTGGAAATAATAATGGGAAAACATCCGGGAAATCTCATTTCATTATTTTCATCTTCTGAAACGTCATCAGCGTCTAATTTGCTGTTAAAGGATGTGTTGGACCAACGACTCCCTCAGCCAGCGAAACCAGATGTTGAAGAAGTGATCTTGATTACAAAAATAACATTTGCTTGCTTAAGTGAAAGTCCACGTTTTCGTCCAAGCATGGAACAAGTGCATAACGAGTTTGTGATGCCAAAATCATCTTCAGTGGATCTATTCCCCATGATCACTCTTGGTCAACTTGTCAATAATTGA 3039 0.3794 MAFTKLLLFRLILCSLLCLDSSQVLKVFTFSSFAFVPISAYEVAENQEREASALFEWRVSLDNQSQASLSSWTTRVSPCKSWKGIVCDNSNSVTDINVTNFGLKGTLHSLNFSSFPKLLSLDISNNSFSGTIPPQIANLSRVSQLKMDDNLFSGSIPEEIGELRNLKQLILAKNQLSGTIPPTIGMLANLVKLDLSKNSISGTIPSIRNLTNIQLLRLSNNTLSGSIPPYIGDLVTLTDFEIQNNSISGSIPSNIGNLTKLVNFYIPLNMISGSIPNTIGNLVNLYALDLSRNNLTGVIPSSLGNLTNLVFLLLFNNTLQGRLPPGLNNFTNFQSLQLSSNSFTGPLPQQICLGGSLRKFAANSNYFTGPVPKSLKNCSSLTRVNLSGNQLSGNISDDFGVYPNLTFVELSSNNFYGHISPNWAKCPNLTSLKMFNNNLSGGIPPELGHAPKLEILDLSSNHLTGKIPEELGNLTSLFDLSISDNELYGNIPTQIGALSRLQNLELAANNFGGPIPKQVGELLNLLHLNLSKNKFRGRIPSFIQLQSLEDLDLSWNLLNGEISVALASMQRLETLNLSHNNLSGAIPSSFKDMISLTNVNISNNQLEGSIPNNPAFLKAPFDALKNNKGLCGNASGLVPCPELSHSGKMKRKAIMLASFLTLGALFLLVFTTGVSLCIYYRRATKAKKEEAKEEKVEDHFAIWSYDGKILYENIIEATEGFDDKYLIGEGGSAYVYKAKLSTGQIVAVKKLHEVSDEETLNLKAFTNEVKALAEIKHRNIVKSLGYCLHPRFTFLIYEFLEGGSLDKVLNNDMHATKFDWNKRVKVVKGVANALYHMHHGCFPPIVHRDISSKNILIDLDYEARISDFGTAKILNPDSHNLTAFAGTYGYSAPELAYTMEVNEKCDVFSFGVLCLEIIMGKHPGNLISLFSSSETSSASNLLLKDVLDQRLPQPAKPDVEEVILITKITFACLSESPRFRPSMEQVHNEFVMPKSSSVDLFPMITLGQLVNN 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01706 1012 SUPERFAMILY L domain-like 314 643 - -
Cca05g01706 1012 Gene3D Ribonuclease Inhibitor 46 209 IPR032675 -
Cca05g01706 1012 Pfam Leucine Rich Repeat 571 591 IPR001611 GO:0005515
Cca05g01706 1012 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515
Cca05g01706 1012 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515
Cca05g01706 1012 SUPERFAMILY L domain-like 63 393 - -
Cca05g01706 1012 SMART LRR_sd22_2 187 212 - -
Cca05g01706 1012 SMART LRR_sd22_2 474 506 - -
Cca05g01706 1012 SMART LRR_sd22_2 282 308 - -
Cca05g01706 1012 SMART LRR_sd22_2 234 260 - -
Cca05g01706 1012 SMART LRR_sd22_2 545 574 - -
Cca05g01706 1012 Gene3D Transferase(Phosphotransferase) domain 1 800 998 - -
Cca05g01706 1012 Gene3D Ribonuclease Inhibitor 325 648 IPR032675 -
Cca05g01706 1012 ProSiteProfiles Leucine-rich repeat profile. 452 475 IPR001611 GO:0005515
Cca05g01706 1012 Pfam Leucine Rich repeat 545 566 IPR001611 GO:0005515
Cca05g01706 1012 SMART LRR_typ_2 163 187 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 115 139 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 569 592 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 282 305 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 210 234 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 451 474 IPR003591 -
Cca05g01706 1012 SMART LRR_typ_2 545 568 IPR003591 -
Cca05g01706 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 191 - -
Cca05g01706 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 190 1010 - -
Cca05g01706 1012 Gene3D Phosphorylase Kinase; domain 1 681 799 - -
Cca05g01706 1012 PRINTS Leucine-rich repeat signature 285 298 - -
Cca05g01706 1012 PRINTS Leucine-rich repeat signature 569 582 - -
Cca05g01706 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 190 1010 - -
Cca05g01706 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 191 - -
Cca05g01706 1012 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Cca05g01706 1012 ProSitePatterns Protein kinases ATP-binding region signature. 727 750 IPR017441 GO:0005524
Cca05g01706 1012 ProSiteProfiles Protein kinase domain profile. 721 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01706 1012 Pfam Protein kinase domain 723 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01706 1012 Pfam Leucine rich repeat N-terminal domain 49 88 IPR013210 -
Cca05g01706 1012 ProSitePatterns Tyrosine protein kinases specific active-site signature. 845 857 IPR008266 GO:0004672|GO:0006468
Cca05g01706 1012 Gene3D Ribonuclease Inhibitor 210 324 IPR032675 -
Cca05g01706 1012 SUPERFAMILY Protein kinase-like (PK-like) 705 989 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01706 Cca-Chr5 36633094 36636487 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01706 16 893 Receptor kinase-like Gene Family AT4G08850 43.710 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca05g01706 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01706 - - gmx:100795732 1426.38