Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01704 ATGGTGTTAACTAAGCTTTCATTGATTCTTGTAATTCTCTCTTCATTCTTAAGCCTCCATGCTGCAAACCAAAATAGGGAAGCAAGTGCTCTATTTGAGTGGAGAGTGAGCCTTGACAACCAAAGCCAAGCCTCTCTTTCTTCATGGACCACTCATGTAAGTCCTTGCAAGTCATGGAAAGGAATTGTTTGTGACAATTCCAACTCTGTCACCGATATTAATGTTACAAACTTTGGACTAAAAGGTACTCTTCACTGTCTCAACTTCTCATCTTTTCCCAAGTTGCTTAGTCTTGATATTAGTAGCAACAGTTTTAGTGGAACTATCCCTCCACAAATTGCTAACTTGTCCTCACTTTCTCGATTGGTAATGACTGATAATCATTTTAGTGGTTCAATCCCCAAGGAGATCGGAGAATTGGGCAACTTGAATCGTCTATTGCTTGATGAAAATCAACTTTCTGGTACCATTCCTCCAACAATTGAAATGTTGGCCAACCTCGTGGAAATTGATGTGGCATATAACTCTTTCTTTGGTACAATCCCTTCCATTAGAAACCTGACAAATTTAGAACACCTTGGGCTCACAAACAATAGTCTTTCTGGCCATATTCCACCTTACATAGGAGACTGCTTGGTCAATTTGACGATTTTTGAAATCGATTCTAATAAAATATCAGGAACAGTTCCTTCCAATATTGGAAACTTGACAAAGCTGAACCAAGTGATTGTGGCCGAGAACTTGATTTCTGGATCAATTCCTTCCTCTATCGGAAACTTGGTCGACCTAACGATCTTAGACCTTTCTATGAACAATTTTTCCGGAGTTGTTCCTTCCACCTTTGGAAATTTGACAAACCTTGGCAAATTTTTACTGTATAATAACAAACTTCATGGCAGATTACCACCAGCAATGAATAACATTACAAGTTTTCAGAATTTACAACTAGCTAACAATAATTTCACTGGGCCTTTGCCGCAACAAATTTGCCTTGGTGGATTACTCACCAAATTTTGTGCTGACCATAATTATTTCACGGGTCCAGTTCCTAAAAGCCTAAAAAATTGCTCCCGTCTTTACAGACTCAGACTAGATGAAAACCAATTGACCGGAAATATATCAGATGATTTTGGTGTATATCCGCAATTGGTCCATGTTTATTTGAGTAGCAATAATTTCTATGGCCACATTTCACCAAATTGGGGAAAGTGTCCCAATCTCACATACCTTATGATGTCCAACAACAATTTATCTGGTGGTATACCCCCAGAACTTGGCCATGCAACCAAGTTAGCAGAACTTGATTTGTCTTCAAATCATCTAACAGGAAAAATTCCAAAAGAACTTGGGAACTTGACCTCATTGTCTAAGCTATCAATAAGTGACAATGAACTTTATGGCAACATTCCTACACAAATAGGTGCTTTGTCCCGCCTTCAAAATTTGGAGCTTGCAGCAAATAATTTTGGTGGCCCAATTCCAAAACAGGTGGGAGAATTGCTCAATTTACTTAACTTGAACTTGAGCAAGAATAATTTCACAGAAATAATTCCTTCGTTTATCCAATTGCCATCTCTTGAAGTTCTTGATCTTAGTTGGAATTTGTTAAATGGAGAAATACCAGTAGCACTTGCAAGTATGGAAAGATTGGAAACACTAAACCTCTCCCACAACAATCTCTCTGGAGCCATTCCATCCAGTTTTAAGGATATGGCTAGCTTGACAAATGTTAACATATCCAACAACCAATTAGAGGGTTCAATTCCTAACAATCCAGCTTTTCTTAAGGCTCCCTTTGATGCTTTGAAAAATAATAAAGGCTTGTGTGGAAATGCCTCCGGTTTGCTGCCTTGCCCAAAGTTAAGCCCTCGTGGAAAAACAAAAATAAAAGTCACCATGTTGACTTTAGTCTTTACTTTGGGTGCTCTATTTATAGTAGTGTTTGTGGTTGGAGTTTTGTCATGTATTTGCTATCGGAGAAGAACAACTGCCAAAAAGGAGGAGGCTAAAGAAGAAAAAGTGGAGGATCATTTTGCCATATGGAGTTATGATGGAAAATTAGTGTATGAAAATATCATTGAAGCCACAAACGGATTTGATGACAAATATCTCATTGGAGAAGGAGGGTCTGCATCTGTTTATAAGGCAAAATTACCCACAGGACAAACTGTTGCGGTGAAAAAGCTTCATGAGGTACCCAACGAGGAAAGAGTCGATTTAAAAGCTTTTACAACTGAGGTTAAAGCCTTGGCAGAAATCAAGCATCGTAACATTGTGAAGTCACTTGGATATTGTTTACATCCACGTTTCACCTTTTTGGTTTACGAGTTCCTAGAGGGGGGTAGTGTGGATAAAGTACTAAACAATGATACACGTGCAACAATGTTTGATTGGGACAGGAGGGTGAAGGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATGCATTATGGTTGCTTTCCTCCTATTGTTCATCGTGACATATCAAGCAAGAATATACTTATAGATTTGGATTATGAAGCCCACATCTCTGACTTCGAAACAGCTAAAATTCTAAATCCTGATTCACACAATTTAACCGCATTTGCTGGAACCTATGGGTATTCTGCACCAGAGCTTGCTTATACTATGGAAGTGAATGAGAAATGTGATGTGTTTAGCTTTGGAGTGCTTTGTTTGGAAATAATCATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTATTTTCATCCTCTGGAACATTACCGGTGTCTAATTTGCTGTTAAAGGATGTGTTGGACCAGCGACTTCCTCAGCCAATGAAGCCAATTGTTGAGGAGGTGATCGTCATTGCAAAAATAACATTTGCTTGCTTAAGTGAAAGTCCTCGTTTTCGTCCAAGCATGGAACAAGTGCATAACGCTTTTGTGATGCCACAATTATCTTCAGTGGATCCACTCCCCATGATCACACTCGGTCAACTTGTAAATAATTAA 2976 0.3874 MVLTKLSLILVILSSFLSLHAANQNREASALFEWRVSLDNQSQASLSSWTTHVSPCKSWKGIVCDNSNSVTDINVTNFGLKGTLHCLNFSSFPKLLSLDISSNSFSGTIPPQIANLSSLSRLVMTDNHFSGSIPKEIGELGNLNRLLLDENQLSGTIPPTIEMLANLVEIDVAYNSFFGTIPSIRNLTNLEHLGLTNNSLSGHIPPYIGDCLVNLTIFEIDSNKISGTVPSNIGNLTKLNQVIVAENLISGSIPSSIGNLVDLTILDLSMNNFSGVVPSTFGNLTNLGKFLLYNNKLHGRLPPAMNNITSFQNLQLANNNFTGPLPQQICLGGLLTKFCADHNYFTGPVPKSLKNCSRLYRLRLDENQLTGNISDDFGVYPQLVHVYLSSNNFYGHISPNWGKCPNLTYLMMSNNNLSGGIPPELGHATKLAELDLSSNHLTGKIPKELGNLTSLSKLSISDNELYGNIPTQIGALSRLQNLELAANNFGGPIPKQVGELLNLLNLNLSKNNFTEIIPSFIQLPSLEVLDLSWNLLNGEIPVALASMERLETLNLSHNNLSGAIPSSFKDMASLTNVNISNNQLEGSIPNNPAFLKAPFDALKNNKGLCGNASGLLPCPKLSPRGKTKIKVTMLTLVFTLGALFIVVFVVGVLSCICYRRRTTAKKEEAKEEKVEDHFAIWSYDGKLVYENIIEATNGFDDKYLIGEGGSASVYKAKLPTGQTVAVKKLHEVPNEERVDLKAFTTEVKALAEIKHRNIVKSLGYCLHPRFTFLVYEFLEGGSVDKVLNNDTRATMFDWDRRVKVVKGVANALYHMHYGCFPPIVHRDISSKNILIDLDYEAHISDFETAKILNPDSHNLTAFAGTYGYSAPELAYTMEVNEKCDVFSFGVLCLEIIMGKHPGDLISSLFSSSGTLPVSNLLLKDVLDQRLPQPMKPIVEEVIVIAKITFACLSESPRFRPSMEQVHNAFVMPQLSSVDPLPMITLGQLVNN 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01704 991 Gene3D Ribonuclease Inhibitor 278 330 IPR032675 -
Cca05g01704 991 Gene3D Ribonuclease Inhibitor 184 277 IPR032675 -
Cca05g01704 991 Pfam Protein kinase domain 701 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01704 991 Gene3D Transferase(Phosphotransferase) domain 1 778 975 - -
Cca05g01704 991 SUPERFAMILY Protein kinase-like (PK-like) 684 968 IPR011009 -
Cca05g01704 991 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Cca05g01704 991 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Cca05g01704 991 SMART LRR_typ_2 212 236 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 523 546 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 92 116 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 404 428 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 187 211 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 260 283 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 140 164 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 452 476 IPR003591 -
Cca05g01704 991 SMART LRR_typ_2 547 570 IPR003591 -
Cca05g01704 991 Gene3D Phosphorylase Kinase; domain 1 659 777 - -
Cca05g01704 991 SUPERFAMILY L domain-like 36 372 - -
Cca05g01704 991 Gene3D Ribonuclease Inhibitor 331 623 IPR032675 -
Cca05g01704 991 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 15 989 - -
Cca05g01704 991 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 15 989 - -
Cca05g01704 991 Pfam Leucine rich repeat 477 536 IPR001611 GO:0005515
Cca05g01704 991 Pfam Leucine rich repeat 381 441 IPR001611 GO:0005515
Cca05g01704 991 Pfam Leucine rich repeat 543 584 IPR001611 GO:0005515
Cca05g01704 991 PRINTS Leucine-rich repeat signature 431 444 - -
Cca05g01704 991 PRINTS Leucine-rich repeat signature 523 536 - -
Cca05g01704 991 ProSiteProfiles Protein kinase domain profile. 699 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01704 991 ProSitePatterns Tyrosine protein kinases specific active-site signature. 823 835 IPR008266 GO:0004672|GO:0006468
Cca05g01704 991 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Cca05g01704 991 ProSiteProfiles Leucine-rich repeat profile. 502 524 IPR001611 GO:0005515
Cca05g01704 991 SUPERFAMILY RNI-like 278 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01704 Cca-Chr5 36598617 36601698 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01704 3 871 Receptor kinase-like Gene Family AT4G08850 43.165 0.0 704
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca05g01704 Pkinase 9.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01704 - - gmx:100797314 1382.08