Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01696 ATGCAAGTGGCGGCAGAACTCCAGCGCACCCAATACCACCAAGACACCCAGATGTGCCGCAAAATCCAACTCACCATCTCCGATCACGCCGCAGACGACGGCGAGGACCCCTTCATTCCGCCCCTCAACTTCGCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGAGCCTGCCAACTTCTCCTTCCTCAAAACCCTCCGCCTCCGCTCCATCATATACTTGTGTCCCGAGCCCTATCCGGAAGCCAACATGGAGTTCCTCAAGGCAAATGGGATCAAGCTTTTTCACTTTGGGATTGAGGGTCATAAGGAGCCTTTTGTGAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGGGGAAAGCACCGAACGGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGTTTGTCATCTGTCTTTGATGAGTATCAGCGCTTTGCAGCTGCGAAAGCAAGAGTCTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCGAGCCTAAAACATTTGCCAATACCATTTTCATGTTTGAAGAGGTAA 603 0.4876 MQVAAELQRTQYHQDTQMCRKIQLTISDHAADDGEDPFIPPLNFAMVDNGIFRSGFPEPANFSFLKTLRLRSIIYLCPEPYPEANMEFLKANGIKLFHFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSLKHLPIPFSCLKR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01696 200 Gene3D Protein tyrosine phosphatase superfamily 38 187 IPR029021 -
Cca05g01696 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 43 197 IPR020422 GO:0006470|GO:0008138
Cca05g01696 200 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 11 199 - -
Cca05g01696 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 37 185 IPR029021 -
Cca05g01696 200 PRINTS Plant and fungal dual specificity phosphatase signature 38 55 IPR020428 GO:0016791
Cca05g01696 200 PRINTS Plant and fungal dual specificity phosphatase signature 75 88 IPR020428 GO:0016791
Cca05g01696 200 PRINTS Plant and fungal dual specificity phosphatase signature 94 108 IPR020428 GO:0016791
Cca05g01696 200 PRINTS Plant and fungal dual specificity phosphatase signature 111 125 IPR020428 GO:0016791
Cca05g01696 200 Pfam Tyrosine phosphatase family 39 190 IPR004861 -
Cca05g01696 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 133 143 IPR016130 GO:0016311|GO:0016791
Cca05g01696 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 11 199 - -
Cca05g01696 200 CDD PFA-DSP_Siw14 38 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01696 Cca-Chr5 36432594 36438055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01696 34 200 Protein tyrosine phosphatase (PTP) family AT4G03960 76.647 7.14e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01696 K18045 - gmx:100814279 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01696 05 36432594 36438055 Cca05g01696 05 36432594 36438055 ECH