Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01691 ATGGAAAACTCAGACCATGACGAACCCGACAAGAAGAGGCCTCATCTCACTTCATCTGTTTCTTCCCGCATGTCTCGAAACTCCACCAACTCTCCCACCACCAACAAAATCGCTGATGCAGGAGTCTTACAGTTCCAGAATCAACAGCTTGTTCATCAGATAGACATCCAAAAACATGCCTTGCATGATCTTGAAGAAAAAATTAGAGAATTGAAAGGAAATCAAAGTTCTTATGATGACTTGTTAATTGCATTGAACCAACTCTGGATTCAGTTGGTTGACGATATGATTCTTCTTGGAATAAGAGCTGGGAGAGGCAAAGAAACATTGCAACGATTAACTTCCATTGATAATTCCAAAGGTTCACTTCCTTCGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGAACTACTGATGATGAAATTATTAATTATGTTGAGGAGGCACTTGCTTTGCGTCAGTCATCTACAAGGGAGTTGTTGAAACACCTGCAAGATTCCATTGATGATAGGATACAAAGAATAGGCAGTATAGCTCAGATTTTACATGGAGATTTATCTTCAGAAGATGCTGTAATCCAAATGAATAAGATTGATGACATGACGCAAGAGGAAGCAAATAATTTATGCGAAGTGATTGATACTCTCCATGCGAAACATAAAGAGTATACTGTTGGCATTCAAAATTCTATCAATGAGTGCTTACAAGATCAATCTGACATTAAACGCCTTGCAGGCGAGCTTGATGAGATTGTGGCTGAACTAGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAAGATGCAGCAATTGGGATGAATCCACCCATCACAGATTCAGTAAATGGGAACTTATCTCCTGAAAACACTGCAGAGAGGACCATGGGCTTGCGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCTCGGGAAGATAATCATACCTTGACAAAGCAATTCCAAGATCTTCAGAATGAACTGAAAGATGATAAATATGTACGCTCTTCCCGAATATATTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGGACCGATATAAAACATTGGTAGAGTCTCTGCAGGCTGGCAGTGTTCATGTTGCAAAATGGGAAAATGAATTAAATTTGAAATTGAAGTCTGCTGATAGTACAAGACATATCCTTGAAAATTCTGACCATAGGATTGATGAGCTAGAGCTTCAATTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAGTTGGAAGAAGCTAAACAGGATACTGGGAGAAAAGACATCAAATCTGAGTTTCATGTTATGGCTTCAGCTTTATCTAAGGAAATGGGAATGATGGAAGCTCAATTAAAGCGATGGAAAGATGCAGCTCATGAAGCTGTATCATTACGTGAGAAAACACATTCATTAAGAGAAGCGTTGAACATGAAGACAAGCGAACTTAAGAGCCTTGCGAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAGAAGTTACAGAAGGAGAATCAGGAATTAGAATTTGTTCTGGATATGTATGGTCAGGAGAATTATGAGAAAAGATATTCAGAAGTTAGAGAATCTGAAAGTAAAGCTCACACTCAAGCTGAAATACTGAAAAATGCCTTAGATGAACATAGCCTTGAGTTGAGAGTAAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAACGGCTTTCTGCCGCAGAAGCTGAAATAGAGGAATTGAGGGCCAAGCTGGACACATCTGAGAGGGAAATTTTGGGGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTCAGACCAGGTGATCGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAAACGAAACAGGTGCATAGTACTTTACTGTCTCAGAAGCAGGCCTTAGCCAAACAACTTCAACAAATTAATTCTTCAATGGAAAATTCAAAGATGAGGATTACACACAGTGAAGAGCAGATGAAAGGTATTTTATCTGAAGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCAATCTGGAATTTGCAAAGTGGGAATTGGCTGATGCTGAGAAGGAATTGAAGTTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAATATGATCAAATTCAGAAAGATACGGAAGCTATTGAAACGGAATTGAAAAGTGAAAGGAGTTTACGGAAGAAGCTGGAGGAAGAACTAATGGAATTGAACAGCAAAATTGCTGAACTGACTTCTGAAACGGGAGAGACCACAATACAAAAACTAGAAAAAGAAATAAGAATTTGCAAGAACATGATCAAGTGTACTGTCTGCACTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTACCATCTGTTTTGCAATCCATGTATTCAGAGAAATTTAGAGCTACGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAAAGTGATGTTCGCTTTGTTAAGATATGA 2643 0.3855 MENSDHDEPDKKRPHLTSSVSSRMSRNSTNSPTTNKIADAGVLQFQNQQLVHQIDIQKHALHDLEEKIRELKGNQSSYDDLLIALNQLWIQLVDDMILLGIRAGRGKETLQRLTSIDNSKGSLPSCPAEDIFLCRLIQKDSIKGTTDDEIINYVEEALALRQSSTRELLKHLQDSIDDRIQRIGSIAQILHGDLSSEDAVIQMNKIDDMTQEEANNLCEVIDTLHAKHKEYTVGIQNSINECLQDQSDIKRLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNPPITDSVNGNLSPENTAERTMGLRELKDSIEEAKIVDADRLSELQDAREDNHTLTKQFQDLQNELKDDKYVRSSRIYSLANDQLQHWMTELDRYKTLVESLQAGSVHVAKWENELNLKLKSADSTRHILENSDHRIDELELQLQKCIIEKNDLEIKLEEAKQDTGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKTHSLREALNMKTSELKSLANKCAEQVLEIKSLKTLTEKLQKENQELEFVLDMYGQENYEKRYSEVRESESKAHTQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEELRAKLDTSEREILGLTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLSDQVIERDDYNIKLVSDSVKTKQVHSTLLSQKQALAKQLQQINSSMENSKMRITHSEEQMKGILSEAIKCNQEEKHLAVNLEFAKWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIETELKSERSLRKKLEEELMELNSKIAELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01691 880 MobiDBLite consensus disorder prediction 1 35 - -
Cca05g01691 880 PANTHER RING FINGER PROTEIN-RELATED 10 880 IPR013956 GO:0004842|GO:0010390
Cca05g01691 880 Coils Coil 47 81 - -
Cca05g01691 880 Coils Coil 413 447 - -
Cca05g01691 880 MobiDBLite consensus disorder prediction 18 35 - -
Cca05g01691 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 879 IPR013083 -
Cca05g01691 880 Coils Coil 583 624 - -
Cca05g01691 880 SUPERFAMILY RING/U-box 827 871 - -
Cca05g01691 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 869 - -
Cca05g01691 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 10 880 - -
Cca05g01691 880 Coils Coil 249 283 - -
Cca05g01691 880 Coils Coil 688 708 - -
Cca05g01691 880 CDD RING-HC_BRE1_like 826 867 - -
Cca05g01691 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Cca05g01691 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Cca05g01691 880 SMART ring_2 828 866 IPR001841 -
Cca05g01691 880 Coils Coil 639 659 - -
Cca05g01691 880 Coils Coil 737 806 - -
Cca05g01691 880 MobiDBLite consensus disorder prediction 1 17 - -
Cca05g01691 880 SUPERFAMILY Tropomyosin 684 828 - -
Cca05g01691 880 Coils Coil 328 348 - -
Cca05g01691 880 Coils Coil 520 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01691 Cca-Chr5 36321359 36330206 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01691 801 875 RAD5 or RAD16-like Gene Family AT5G05130 26.190 4.76e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01691 K10696 - gmx:100796610 1439.48