Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01690 ATGCTATTTCTCAACTACCACACTTCCAACACCATCATTACCTCCCATTCAAGAACCAGCTTTTTCCCTTTGAAGCTCACAGCATCGACAAGTTTGTTAGCTGTTAGCCTGTTACAATCAATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGAATCCATTCAGTTCTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAGTTGAGGGAGGAACACTGTCCATGCATTTTGTAGATAATTATCATATGGCTATGGAGAAAGGACCCGTGTCAGACATTCGGATAAGGTCAAGGAAGGCTACTTTATCAGATTGCTCCCGATTTTTACGTCCTGGAATTGACGTATGTGTACTATCAGCTCCTCAACAATCTGATGATTCAGATGCAATTAATGTGGACCCTGTTTGGGCTGATGCTAAAATAAGTTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCTTGTCAGTTTTATGTGAACTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAAGTCTAAGCAAGGAGATTAAAGTTGTTGGAATCAATCAAATATCCATCCTACAAAAACTTGAACACATTCCTTGTGAAGGTCAGCACCACAGGTGGGATTCATCTGAGGACTGCTCTATAATATCACATACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACTTCAGTTATAAGGAAGGTTTCATTCTGTGTGAGATCTCTTGAAGACAAGCTTGTGTATCAAATTTTGGGAAGAGATTCTGTTAGCACTTCATTGGACAATGCATCTCACATTGCTGTTGTGAGTTTCAAAACAGAGAATGGCCTGTTAGTGCCTATTGTTTCTGAATTAGCTACACCAAAAACCAAAAGGATTGATCTTGTTCAGGAATCCAATGAAGATAAAGTATCACCATCTTATAATGTTGAGGGATTAAGGCGTTCCAAGCGCCGGAATGTGCAGCCTGAGCGCTACCTTGGTTGCAACAATGTATCCGAGATTGATGTTGGTTCTTTTAGAAACAGACCACCAGTTAAGATAGACACTTGGAAGgatgatgatgatgatgatgaACTGCATATACCATTAGCATGCCTGTTTGGTTTGCAGCAAAACTGTCTAGAAGAGAATACTGATCATCATCAAAGGGTAAGGAAGGTGAGTGCTTGCCGGGAGCTTGTGGTGTACAGTAGAAAGAGGCCTAAAATCCGGAAGGTAAAGTCAGGAGATGATGCTCAAAGTGAACATCAAAATCATCTTGCAATTATTCCTCTTCCTGATCAAGATGATCCAGTAGCCATTGAGCATGGTGATCTAAACGAGAAGGTTACTAGAAGTTATGGTCATGAATCCTCTGAAATTTCTTCCAAATATTATCATCTAACTTGTAGTGGTACCCCTAAATCAAAGAGTAATGATATTAAATTGTTAACTCTTGAGCCTCATAATCATACAACAAAGCCAGAGGATGCAGAGAAGACTGATGATTTGTCATTGAGATATAATAATTATAGTTATGGCGCCCCTAAGTCACAGAGGAAGAATTTGTGTGGTCTGGATGATATGGTGGATCTTGGAAACAAATGGGAAGGGATCAATTCCAATAAAGGAGCTTATGGGAAAAAACCTCGTATAACATATTTAAGAAGTAAGAATCATGAAGAAGAAAGAAGATACCATTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCTTACTTAAAGAATATTAATACAAAACCATCCAATGAAGAACCATCTATTGCTGACCAGTGGAAGCAAAGCAACACAACTAGCAACACTGACCAAAAGATTGAAGAAGAGATACTGGATGAAGAGGATGCGGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCAAGTTATCTAGAAGACACAGAGGATTTAAATACTGTTGTTCTCAATGAGACTACAGAAAAGCCGAATGAAGGTTGTCCACATGATTTCAGATTGAATGAAGAAATTGGAATTTACTGCTATAGATGCGGCCTTGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCAGTGTGTCACCAAGAGGAGAAACAAAGTGCTGAAGAAGATTCAAGGACTAAGGCTGATGAAGAGGATGACTATGATCTTTTCCCAAATCTTGTTTCTCCTGAGGAACCTATGTCTGAAGAAAATGACAACGTTTGGTCATTAATTCCTGAACTTAGAGAAAAGTTGCATGCCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGATCCAGGACTTATGGAAGCATCATCCAAAAGAAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCTCTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATCAAGTGGAATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATGGCTGTTATTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAACATGTTTTGGATTGTCTCGAGAAGATACAAAAATGGCATTCACATCCGAGTGTTCTCATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCTCACAGAAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGATCATGGTGTTGGATGAAGGGCACAATCCAAGAAGCACTAAATCTAGGTTGAGAAAAGTTCTGATGAAAGTACAAACTGATTTGAGAATACTTCTTTCTGGTACATTGTTTCAGAACAATTTTTGTGAATACTTCAACACTTTGTGCTTGGCAAGACCAAAGTTTATTAATGAAGTACTGAAAGCACTAGACCTTAAATACAGGAGGAAAGGGAAAGTAGCAAAGAAAGCACGTCATTTATTGGAGTCACGAGCTAGAAAATTCTTCTTAGACAAAATTGCCAAGAAAATTGACTCAAATAATGGTAGGGAGAGGCAACAGGGTCTAAAAATGTTGAGGAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGTAGTTCTGATGGTCTACCTGGCTTGCAAATTTATACATTGCTCATGAATTCAACTGATACACAGCATGAGATTTTGCAGAAGCTGCACAAAAAAATGGCCAAGTGCAATGGATACCCTTTAGAGTTAGAACTGTTGATAACTCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCTCTCAGGAGCAATTGATGGAGCTAGAGAAATGCAAATTTGATCTAAAAATGGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAAGGAGAAGGTTCTCATATTCTGCCACAATATTGCACCTGTGAGGTTATTTATGGAATATTTTGAGAAGTACTTTGGATGGCAAAAGGGTAGGGAAGTGTTGGTGCTAACCGGGGAACTAGAACTCTTTGAAAGAGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGGGTGTCAAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTAACTGCTGCTTCTCGTGTGATCATGTTGGACTCAGAATGGAACCCTTCAAAAACAAAGCAAGCTATTGCACGAGCCTTTCGTCCTGGTCAGCAGAAAGTGGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAGGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTTAGTGAGGCATTTGTGGAGGACCCTTCCCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTGAGGGAGATGGTTGCTGAGGACAAGTCTAAATCATTTCATATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 4053 0.3943 MLFLNYHTSNTIITSHSRTSFFPLKLTASTSLLAVSLLQSMAHRKRRLDQLKNPFSSHPFEAVAFGSWQAVEFIKVEGGTLSMHFVDNYHMAMEKGPVSDIRIRSRKATLSDCSRFLRPGIDVCVLSAPQQSDDSDAINVDPVWADAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRSLSKEIKVVGINQISILQKLEHIPCEGQHHRWDSSEDCSIISHTKLLLGKVLCDLSWLVVTSVIRKVSFCVRSLEDKLVYQILGRDSVSTSLDNASHIAVVSFKTENGLLVPIVSELATPKTKRIDLVQESNEDKVSPSYNVEGLRRSKRRNVQPERYLGCNNVSEIDVGSFRNRPPVKIDTWKDDDDDDELHIPLACLFGLQQNCLEENTDHHQRVRKVSACRELVVYSRKRPKIRKVKSGDDAQSEHQNHLAIIPLPDQDDPVAIEHGDLNEKVTRSYGHESSEISSKYYHLTCSGTPKSKSNDIKLLTLEPHNHTTKPEDAEKTDDLSLRYNNYSYGAPKSQRKNLCGLDDMVDLGNKWEGINSNKGAYGKKPRITYLRSKNHEEERRYHYKDRTLNAAAYKDLINSYLKNINTKPSNEEPSIADQWKQSNTTSNTDQKIEEEILDEEDAEEVSEMDMLWRELEVSLASSYLEDTEDLNTVVLNETTEKPNEGCPHDFRLNEEIGIYCYRCGLVSTEIKYITPPFIQHSVCHQEEKQSAEEDSRTKADEEDDYDLFPNLVSPEEPMSEENDNVWSLIPELREKLHAHQKKAFEFLWQNIAGSMDPGLMEASSKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWNIPIPVYLIHGRRTYRVFKQKSMAVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTDLRILLSGTLFQNNFCEYFNTLCLARPKFINEVLKALDLKYRRKGKVAKKARHLLESRARKFFLDKIAKKIDSNNGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFSQEQLMELEKCKFDLKMGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVRLFMEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDKSKSFHMIMKNEKASSTNK 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01690 1350 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 59 1345 IPR044567 GO:0080188
Cca05g01690 1350 CDD SF2_C_SNF 1143 1279 - -
Cca05g01690 1350 MobiDBLite consensus disorder prediction 716 750 - -
Cca05g01690 1350 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 793 993 IPR014001 -
Cca05g01690 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 748 995 IPR027417 -
Cca05g01690 1350 Pfam Helicase conserved C-terminal domain 1151 1267 IPR001650 -
Cca05g01690 1350 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 59 1345 - -
Cca05g01690 1350 Gene3D - 1072 1350 IPR027417 -
Cca05g01690 1350 Pfam SNF2-related domain 781 1036 IPR000330 GO:0005524|GO:0140658
Cca05g01690 1350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1068 1329 IPR027417 -
Cca05g01690 1350 SMART ultradead3 764 1007 IPR014001 -
Cca05g01690 1350 MobiDBLite consensus disorder prediction 600 623 - -
Cca05g01690 1350 SMART helicmild6 1179 1268 IPR001650 -
Cca05g01690 1350 CDD DEXHc_ATRX-like 768 998 - -
Cca05g01690 1350 MobiDBLite consensus disorder prediction 717 737 - -
Cca05g01690 1350 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1155 1315 IPR001650 -
Cca05g01690 1350 Gene3D - 743 1035 IPR038718 -
Cca05g01690 1350 MobiDBLite consensus disorder prediction 600 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01690 Cca-Chr5 36305479 36313623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01690 1147 1286 RAD5 or RAD16-like Gene Family AT5G43530 33.566 2.06e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca05g01690 SNF2_N 2.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01690 K10875 - gmx:100811703 2232.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01690 05 36305479 36313623 Cca05g01690 05 36305479 36313623 ECH