Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01683 ATGATTTCCCACCTCAATCAAAACCACCCCTTTCATTTCTACCCTGGTACATATGTAAAATCGCTGACACCACAAAACCCATTTTCCGTTTTTCTCAAAGTTCCAAGCTTTACCGGTTCTACGGCTACCCATTATCTTAAAGTCTCATGGGTGCATTCTGTTAACTCACACTTTTCTGTGAAACGGGTATCTCGGCATGTAAAGGGGAAGGTGCAGGATGTGCTGTTAGATTACTTGCATTCAAGCAGGGGATACAGCTTCATGGATGCTGAATTCATTAGCCAAAACTCGCCATCTTTTGTTCACGGTTTGGTGTCCGAGTTTCATGGCCAGGATGAAGATGTTGCAAGGTGTTTGACGAAATTCCTGAGGTACAACCCCATTAATGAGTTTGAACCATTTTTTGAGAGTTTGGGGATTAGCCCTCATGAGTTGCCTTTGTTTCTCCCACGTGGCATGATGTATTTGTCTGATGATCATGTTTTGCTTGACAATTTCCATGCTTTGAGTAACTATGGGGTTCCAAGAAATAGAATAGGGAAAATTTACCAGCAGGCAAAGGAGGTTTTTGGGTATCCTAGTGGATTGTTGTTGTCGAAATTTCGAGGTTATGAGAATTTGGGTTTGAGTAGGTCCATGGTCATCAAACTAGTTGTTTGTTGCCCTTCACTTTTGGTTGGTGAAACATGCAGTGAATTGGTTATGGTTTTGGATTGGTTGAAGAAAATTGGTATTGAACATGATTGGATTGGGAATTATTTGTCTTGTTTGAAAACGTACGAGTCAAGAAGAATGCTTGATGCTATGGAATTTCTTCATAAAGTGGGCTATTCTGAAGAACAGATGCACAATTTGTTCAAGGAAAACCCTGCATTATTATTGGAAGGTCTTGAGAAGGTGTATGTATTTTTGGGTCGAGCATTTAAGTTAGGTCTCAATAAGAATGTGATTTATTCTTCCTTTATAGAATATCCTCATATCTTGTCAAATAAGTGTGTGAAAAATCTATTGGGAGTGATTGGCTTTTTGTATTCTATTGGAATGGATACAGATGGCATTTCAAACATTTTGTCTAACCACATGCAACTCTTGAGCGCACATCCCTTGAAAGGTCCTAAATCTGTTTGTTTGCAGTTAAAAATTAGAAAAACTGATCTATGTCAAATCATAAAGGATGATCCACTAAAGCTAATTAGTTTGGCTTCAAAACTGAAACAGAATAGTACTGTACAATTATCTTGCGATGAGCCAAGTAAACATCTGGATAAAACAACATTCTTGCTGAAGTTAGGATATGCTGAGAACTCTGAGGAGATGGCAAAAGCAGTAAAAAAGTTCCGAGGGAGAGGTGATCAATTACAGGAGAGGTTTGATTGTCTGGTTGAAGCTGGTTTGGACTATAACATTGCAATCAAAATGATACAACGTGCTCCTATGATTCTAAACCAGAACAAAGTTGTGATTCAAAAGAAGATTGATTTCTTGAGAAACATTTTAGGTTATCCATTAGATTGCATTGTGTCATTTCCAGCATACTTGTGCTATGATTTGGAGAGAATTATGCTCAGATTTTCAATGTATGCCTGGGTGGCGGAAAGGAAAGCATCAAAACCTATGATGACCTTGAGCACTATCCTTGCATGTTCTAATGAAAAGTTTGTAAAATACGTTGTGAATGTGCATCCCGAAGGTCCAATCATCTGGGAAGATCTAAGGCGGTTATTGCAAAAAGATAAGAGCAAACTCTTCCTTTAA 1755 0.384 MISHLNQNHPFHFYPGTYVKSLTPQNPFSVFLKVPSFTGSTATHYLKVSWVHSVNSHFSVKRVSRHVKGKVQDVLLDYLHSSRGYSFMDAEFISQNSPSFVHGLVSEFHGQDEDVARCLTKFLRYNPINEFEPFFESLGISPHELPLFLPRGMMYLSDDHVLLDNFHALSNYGVPRNRIGKIYQQAKEVFGYPSGLLLSKFRGYENLGLSRSMVIKLVVCCPSLLVGETCSELVMVLDWLKKIGIEHDWIGNYLSCLKTYESRRMLDAMEFLHKVGYSEEQMHNLFKENPALLLEGLEKVYVFLGRAFKLGLNKNVIYSSFIEYPHILSNKCVKNLLGVIGFLYSIGMDTDGISNILSNHMQLLSAHPLKGPKSVCLQLKIRKTDLCQIIKDDPLKLISLASKLKQNSTVQLSCDEPSKHLDKTTFLLKLGYAENSEEMAKAVKKFRGRGDQLQERFDCLVEAGLDYNIAIKMIQRAPMILNQNKVVIQKKIDFLRNILGYPLDCIVSFPAYLCYDLERIMLRFSMYAWVAERKASKPMMTLSTILACSNEKFVKYVVNVHPEGPIIWEDLRRLLQKDKSKLFL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01683 584 Pfam mTERF 311 553 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 Pfam mTERF 167 299 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 42 572 - -
Cca05g01683 584 PANTHER CGI-12 PROTEIN-RELATED 42 572 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 SMART mt_12 319 349 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 SMART mt_12 503 534 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 SMART mt_12 215 246 IPR003690 GO:0003690|GO:0006355
Cca05g01683 584 Gene3D Transcription termination factor 3, mitochondrial 302 565 IPR038538 -
Cca05g01683 584 Gene3D Transcription termination factor 3, mitochondrial 125 301 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01683 Cca-Chr5 36280098 36282509 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca05g01683 mTERF 7.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01683 - - gmx:100803162 712.22