Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01679 ATGCAAATTTCTCTCAGCAATTTAGCCTTCAAGACCCCTCAACTCTTCCCATTCCACCAACACTTTTTCCCTCCAAAGCCACTGAGCCACCAAGTTTCACTGCACACCCATGTCAATGTCCTGAAAGGGTCGGGGTTTTTGTCCGAAATCAGCAAAGCAATTGATCACGAAGAACAGTACCGGATAGCCCGGTCACAGGTTAACCGCAAAGTTTTGGACTTGGAAGGTTATTCCATTGAGGGTCTTTCAGTTGGGGGCCAAGAGACATGTATCATAATCCCTGAATTCAAGTGCACTTTTGACATTGGGAGGTGCCCTAGCAGAGCCATTCAGCAAAACTTCCTTTTCATTACTCATGCTCACCTTGATCACATTGGAGGGCTGCCTATGTATGTAGCTAGCCGTGGTTTGTACAATTTAAAACCTCCCACTGTGTTTGTGCCTCCTTGCATCAAAGAGGATGTTGAGAAGCTGCTTGATATTCACCGAACAATGGGGCAAGTTGAATTGGATGCTGAAGTGGTCGCATTGGATGTGGGGGAGACGTATGAGATACGGAATAACCTTGTTGTCCGACCATTCAGAACACAACATGTTATACCCAGCCAGGGTTATGTAGTTTACTCAATCAGGAAAAAGCTGAGGAAACAATATGCCCACCTGAATGGGAAACAAATTGAGAAATTGAAGAAGTCAGGTGTTGAGATTACAGACATTATATTATCTCCTGAGGTGGCCTTCACTGGTGATACAACATCAGATTTTATGCTTGACCCATGTAATGCTGATGCATTGAGAGCAAAAATTCTTATAACTGAGGCAACTTTCCTAGATGATTCATTCAGCATAGATCATGCCCGGCAACATGGTCATACACATTTATTTGAGCTCATTGCAAATGCACAGTGGATTCGCAACAAAGCAGTTCTATTGACTCATTTTTCATCAAGATATACTATAGAGGATATTCGTCAAGCTGCATCAAAATTGCAGTCCAGGCTGTCCGCCAAAGTGGTTCCTCTTACAGAAGGCTTCAGATCTATCGTTCAAGATTTTGTTTCGCCCAACATCAAGTCTGTTTCACATTTTGTTGACACAGCTCTGATCTTTTTCCCTCCAATCTTGGTTGCCCTACTTTTCACGATCTGGGTCTTTGGAAACTGCCGTTGTTGGTCAATTATGAGGAAAAGGGAGAGGGAGAATCCTTGCGGCGTGTGTGGCCACTATCACAAATATGAAGAAGGCGAAGTGTGTCCGATTTGCGGTCATCGGATTCCGGTTGGATCGGAGAAAACTTCGATACAAGTTAGTGCTTTTCCTTCCGTGATTCTTCCGGAATTTCTTTACCTTGGAAGCTATGACAACGCATCACGCTCGGAGCTTCTCAAGACTCAGGGGATATCTCGTATCCTCAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAATTCGTTTACCTATCACTGCCTCCCGGATGACAAGACTTTGCCATTTGATGAAGCGATTCAGTTTTTAGAGCAATGTGAGAAGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGGTCTCCAGCTATAGTGATTGCATACCTGATGAAGTCCAAAGGATGGAGACTTGCCCAGAGTTATCAGTGGGTAAAGGATCGGAGACCTTCGGTTGAATTAACTCAAGGTGTGTATCAGCAACTGCAAGAGTTTGAGCAAAAGATCTATGGACTGATCGGTAGTGGAAGCTCTCTGTTACCTGGTTTCTCATCTACAGCACCTCCTTCCATTAACTTTGGTTTCCCAAAGATCAATGATCCAGCTCAGCTTCCTTCCTTCAGCACTGCTGGAACACCATCAATCTTCACACGAGCACCCCTAGACATTACTCCAACTGAGTTTACATTTGGAGCAGCCACATGTGTGATTAAGCTGCTTGACAATTTGGCTTGTGGTAAAGTTTACAGACAGCAGGATACAGAGGCCCAGAAGCCAGAACTATAA 1998 0.4419 MQISLSNLAFKTPQLFPFHQHFFPPKPLSHQVSLHTHVNVLKGSGFLSEISKAIDHEEQYRIARSQVNRKVLDLEGYSIEGLSVGGQETCIIIPEFKCTFDIGRCPSRAIQQNFLFITHAHLDHIGGLPMYVASRGLYNLKPPTVFVPPCIKEDVEKLLDIHRTMGQVELDAEVVALDVGETYEIRNNLVVRPFRTQHVIPSQGYVVYSIRKKLRKQYAHLNGKQIEKLKKSGVEITDIILSPEVAFTGDTTSDFMLDPCNADALRAKILITEATFLDDSFSIDHARQHGHTHLFELIANAQWIRNKAVLLTHFSSRYTIEDIRQAASKLQSRLSAKVVPLTEGFRSIVQDFVSPNIKSVSHFVDTALIFFPPILVALLFTIWVFGNCRCWSIMRKRERENPCGVCGHYHKYEEGEVCPICGHRIPVGSEKTSIQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKTLPFDEAIQFLEQCEKDKERVLVHCMSGKSRSPAIVIAYLMKSKGWRLAQSYQWVKDRRPSVELTQGVYQQLQEFEQKIYGLIGSGSSLLPGFSSTAPPSINFGFPKINDPAQLPSFSTAGTPSIFTRAPLDITPTEFTFGAATCVIKLLDNLACGKVYRQQDTEAQKPEL 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01679 665 CDD DSP_plant_IBR5-like 440 569 - -
Cca05g01679 665 SMART dsp_5 439 572 IPR020422 GO:0006470|GO:0008138
Cca05g01679 665 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 496 564 IPR000387 GO:0016311|GO:0016791
Cca05g01679 665 CDD RNaseZ_MBL-fold 85 274 - -
Cca05g01679 665 Gene3D - 77 346 IPR036866 -
Cca05g01679 665 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 440 574 IPR029021 -
Cca05g01679 665 SMART ptp_7 476 578 IPR003595 -
Cca05g01679 665 ProSitePatterns Tyrosine specific protein phosphatases active site. 517 527 IPR016130 GO:0016311|GO:0016791
Cca05g01679 665 Pfam Dual specificity phosphatase, catalytic domain 448 571 IPR000340 GO:0008138|GO:0016311
Cca05g01679 665 PANTHER - 33 348 - -
Cca05g01679 665 PANTHER TRNASE Z TRZ2, CHLOROPLASTIC 33 348 - -
Cca05g01679 665 Pfam Beta-lactamase superfamily domain 114 314 IPR001279 -
Cca05g01679 665 ProSiteProfiles Dual specificity protein phosphatase domain profile. 439 575 IPR020422 GO:0006470|GO:0008138
Cca05g01679 665 Gene3D Protein tyrosine phosphatase superfamily 433 576 IPR029021 -
Cca05g01679 665 SUPERFAMILY Metallo-hydrolase/oxidoreductase 94 331 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01679 Cca-Chr5 36216462 36242648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01679 394 559 Protein tyrosine phosphatase (PTP) family AT2G04550 76.331 5.58e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01679 K00784 - gmx:100808196 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01679 05 36216462 36242648 Cca05g01679 05 36216462 36242648 ECH