Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca05g01655
ATGTTTTCCAAAGAGCAAAAGAGAGCAGCTATGCATGAGAAGCTGCAACACCTTCGTTCTATTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAATCGATGCATCAAAGTACATCGAAAAGTTAAAGCAAAAAGTAGAAAGACTGAATCAAGAGATAGCATCTGCAGAAACTTCCAGTGTCCACAACCCTTTGCCTATGGTCACAGTAGAAACCCTAGAAAAAGGATTTCTGATAAATGTTTTCTCAGCAAAAGGGTGTCCAGGTCTGCTTGTTTCCATATTGGAGGCTTTTGAAGAGATGAGACTCACTGTGCTGGAAGCTAGGGTTTCTTGTACAGACACTTTCCGATTTCAAGCAGTTGGAGAAAATGAAGAACAAGCGGAGACAATTGATGCACATGCTGTGAAAAAAGCAGTGGGACAAGCAATAAAGAACTGGAGCAAAAGTGGCGATCAAGACTAA
468
0.4081
MFSKEQKRAAMHEKLQHLRSITNSHALNKTSIIIDASKYIEKLKQKVERLNQEIASAETSSVHNPLPMVTVETLEKGFLINVFSAKGCPGLLVSILEAFEEMRLTVLEARVSCTDTFRFQAVGENEEQAETIDAHAVKKAVGQAIKNWSKSGDQD
155
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca05g01655
155
Gene3D
-
3
66
IPR036638
GO:0046983
Cca05g01655
155
PANTHER
TRANSCRIPTION FACTOR BHLH FAMILY-RELATED
2
154
-
-
Cca05g01655
155
CDD
ACT_UUR-ACR-like
89
145
-
-
Cca05g01655
155
PANTHER
TRANSCRIPTION FACTOR SCREAM2-RELATED
2
154
-
-
Cca05g01655
155
SUPERFAMILY
HLH, helix-loop-helix DNA-binding domain
6
61
IPR036638
GO:0046983
Cca05g01655
155
Coils
Coil
33
60
-
-
Showing 1 to 6 of 6 entries
Previous
1
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Cca05g01655
Cca-Chr5
35938490
35939978
Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca05g01655
11
152
Basic Helix-Loop-Helix Transcription Factor Gene Family
AT5G10570
27.848
1.64e-06
44.7
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca05g01655
-
-
gmx:100306253
283.108
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Cca05g01655
05
35938490
35939978
Cca01g01990
01
46469446
46471369
ECH
Cca07g01714
07
43133252
43135320
Cca05g01655
05
35938490
35939978
ECH
Cca01g01990
01
46469446
46471369
Cca05g01655
05
35938490
35939978
ECH
Cca05g01331
05
31330512
31332682
Cca05g01655
05
35938490
35939978
ECH
Cca01g00600
01
7646423
7648577
Cca05g01655
05
35938490
35939978
ECH
Cca05g01655
05
35938490
35939978
Cca05g01655
05
35938490
35939978
ECH
Cca01g00237
01
2463013
2464906
Cca05g01655
05
35938490
35939978
PCT
Showing 1 to 7 of 7 entries
Previous
1
Next
Select All
Download Selected Rows