Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01652 ATGTCGCCGGTGGCCGGACCACACGCCCCTCTCCTCCAAGGATCCAAGAACGTTCCGCCGGCGACCGTGCCGGGCGCCGTGTTCAATGTCGCCAACAGCATAATCGGCGCCGGGATCATGTCTCTGCCGGCGACGCTCAAGGTTCTGGGCGTGGTTCCGGCGCTGGCGCTGATTCTGGTGGTTGCGTTTCTGGCGGAAGTTTCGGTGGAGTTTCTGATGCGGTTCACACGTGCGGGGCAAACGACGACGTATGCGGGCGTGATGAGAGAGGCCTTTGGACCCTTGGGAGCAGTCGCAGCTCAAGCTGCTGTTGTCATCACAAATCTCGGATGTTTAATTATGTACCTTATTATTATTGCGGATGTGTTTTCTGGGAATCAACGCGAAGGGGAAGTGCACTTGGGTGTTCTGCAACAGTGGTTTGGAATTCACTGGTGGAATTCGCGCCAATTTGCTCTTTTCCTTGTCTCAGTCTTCGTGTTGCTTCCGTTGGTTCTGTTCCGTCGTGTAGAGTCATTGAAGTTCAGTTCTGCAGTATCAACTTTCCTTGCTGTGGCCTTTGTTACAATATGTACTGTGTTGGCAATAGTGGCTATTGTAGAAGGAAAGACAGAGTCCCCTAGATTGTTTCCTTCTTTGGACCGCCATACCTCTTTCTTCGATCTGTTTACTGCAGTTCCAGTCATAGTCACAGCCTACACGTTTCATTTTAATGTGCATCCAATTGGGTTTGAGCTTTCCAAGCCATCTGAGATGAAAACTGCTGTTCGAATAGCATTGCTGTTTTGTGCTCTCATTTACTTTTCCATTGGCCTATTTGGGTACCTCTTGTTTGGGGATTCAACACAATCTGATATTCTCGTGAATTTTGACCAGAATGCTGGTTCTGCAATTGGTTCCTTGCTCAATATTTTAGTCCGTTTGAGCTATGCATGCCATGTTACGTTGGTTTTCCCTCTCCTCAACTTCTCTCTGAGAACCAACATAGATGAATTCTTGTTCCCCAAGAAGCCTCTGCTGGCCACTGACAGCAAGAGATTTATAAGCCTCACTCTTGTGCTGCTAGTCTTAAGCTACACTGCTGCTATTTTAGTACCAGATATTTGGTACATCTTTCAGTTTGTGGGATCAACTTCCGCAGTGTGCCTTGCCTTTGTCTTCCCTGGTTCAATTGTTCTAAGAGATTTTCACGGTATATCAACAAGAAGGGACAAAATTATTGCGCTCGTGATGGTTATAGTAGCTGTAATAACAAGTGTGATTGCTATCTCCACCAACGTATACAAAGCTATTCAGTAA 1299 0.4711 MSPVAGPHAPLLQGSKNVPPATVPGAVFNVANSIIGAGIMSLPATLKVLGVVPALALILVVAFLAEVSVEFLMRFTRAGQTTTYAGVMREAFGPLGAVAAQAAVVITNLGCLIMYLIIIADVFSGNQREGEVHLGVLQQWFGIHWWNSRQFALFLVSVFVLLPLVLFRRVESLKFSSAVSTFLAVAFVTICTVLAIVAIVEGKTESPRLFPSLDRHTSFFDLFTAVPVIVTAYTFHFNVHPIGFELSKPSEMKTAVRIALLFCALIYFSIGLFGYLLFGDSTQSDILVNFDQNAGSAIGSLLNILVRLSYACHVTLVFPLLNFSLRTNIDEFLFPKKPLLATDSKRFISLTLVLLVLSYTAAILVPDIWYIFQFVGSTSAVCLAFVFPGSIVLRDFHGISTRRDKIIALVMVIVAVITSVIAISTNVYKAIQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01652 432 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 431 - -
Cca05g01652 432 Pfam Transmembrane amino acid transporter protein 21 424 IPR013057 -
Cca05g01652 432 PANTHER AMINO ACID TRANSPORTER 3 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01652 Cca-Chr5 35907235 35910471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01652 21 429 Amino Acid or Auxin Permease AAAP Family AT3G56200 62.103 3.58e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01652 - - gmx:100800330 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01652 05 35907235 35910471 Cca01g00240 01 2495414 2498361 PCT