Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01640 ATGAGTATTGTAGCCAAGAAGTACTTCTTCAAAGTCTACGTTCCAGAGAAACACTATGAAAGAATGCTTATCCCCAATGTTTTTGTGAAGTGGACACGTTTAAAAGAAAGGATCCCTGAAGATGTGATCCTCAGAAATGGTAGTGGGAGGGTTTGGTGTGTGAAAACACGCCGTATTGGAGACAAGTTGTTCCTTGATGAGGGTTGGAAGGCTTTTCGAGAGGAAAACTGTGTAGGAAAAGCAGACTTTATGGTTTTCAAGTACAATGGGAACAAGGAGTTCAAGGTTATAGTCCTTGAACTATCTACACAGTGTGAAAAAACTGTCATAAAGTCCGAGGTAGaggaggaggagaatatggatgaaggcaaagtagctgcagaagaagatgaggaagaacatgaaggcaagacagatgatgaagacggcgaggaggaggaggatgacgacaataatagtgacaatgattataatgataacgatGAGTTTACAGAGATGGAAGAAGAGAGTGAAGAAGAACATAATTTTCAATACATGAAGGCATCAAGGAGTCAAAGTAATAGTAGAGCCTGCAAAAGGGAGACTGCAACAAGTTCCACACCCAAGATTGAGGATCCTCAAATTGAAGACTATGAATTTGATCCAGAAATGTATATTCAGTCTGGCAATCCATATTTTGAAGCAAAAGTCTATAAAAGTAGACGCAACGAAATGCATGTTCCAGCAAATGTCCTTAGAAACTCGTCCCTTACTTTTCCAGAAAAGATTACCCTTTTACCTTGCCAATGCTCCCAACGCCAGGATATTCAAAGAAATGAATTACGGAAGTATCATCTCAGCTTGTCACAACAAACACCCATATGCAGAAGATATTGGGAAGCAACAAAAGTGTCAAAGTGGAATGATGGTCGAGTATGTGTTAGAGGGTGGGGAAACTTTTGTAGGAGGCACAAGATCAAAGAAAAGGATGTATGCATCTGTGAAATTATATCAGGGGAAGACCAAGTAATAAGAACAATTCGGGTGCACGTGCTTGAACGGATGAACAGACTAAGGAATTGTACTAGCAGTAAAATTGGACATTAA 1086 0.3462 MSIVAKKYFFKVYVPEKHYERMLIPNVFVKWTRLKERIPEDVILRNGSGRVWCVKTRRIGDKLFLDEGWKAFREENCVGKADFMVFKYNGNKEFKVIVLELSTQCEKTVIKSEVEEEENMDEGKVAAEEDEEEHEGKTDDEDGEEEEDDDNNSDNDYNDNDEFTEMEEESEEEHNFQYMKASRSQSNSRACKRETATSSTPKIEDPQIEDYEFDPEMYIQSGNPYFEAKVYKSRRNEMHVPANVLRNSSLTFPEKITLLPCQCSQRQDIQRNELRKYHLSLSQQTPICRRYWEATKVSKWNDGRVCVRGWGNFCRRHKIKEKDVCICEIISGEDQVIRTIRVHVLERMNRLRNCTSSKIGH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01640 361 MobiDBLite consensus disorder prediction 179 204 - -
Cca05g01640 361 Gene3D - 211 349 IPR015300 -
Cca05g01640 361 CDD B3_DNA 7 99 IPR003340 GO:0003677
Cca05g01640 361 SUPERFAMILY DNA-binding pseudobarrel domain 219 343 IPR015300 -
Cca05g01640 361 Pfam B3 DNA binding domain 9 98 IPR003340 GO:0003677
Cca05g01640 361 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Cca05g01640 361 Gene3D - 2 104 IPR015300 -
Cca05g01640 361 MobiDBLite consensus disorder prediction 112 206 - -
Cca05g01640 361 ProSiteProfiles B3 DNA-binding domain profile. 7 102 IPR003340 GO:0003677
Cca05g01640 361 SMART B3_2 9 102 IPR003340 GO:0003677
Cca05g01640 361 MobiDBLite consensus disorder prediction 119 172 - -
Cca05g01640 361 PANTHER B3 DOMAIN-CONTAINING 5 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01640 Cca-Chr5 35831138 35833305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01640 9 345 B3 DNA Binding Superfamily AT5G60140 23.955 1.56e-21 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca05g01640 B3 3.5e-15 CL0405