Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca05g01640 | ATGAGTATTGTAGCCAAGAAGTACTTCTTCAAAGTCTACGTTCCAGAGAAACACTATGAAAGAATGCTTATCCCCAATGTTTTTGTGAAGTGGACACGTTTAAAAGAAAGGATCCCTGAAGATGTGATCCTCAGAAATGGTAGTGGGAGGGTTTGGTGTGTGAAAACACGCCGTATTGGAGACAAGTTGTTCCTTGATGAGGGTTGGAAGGCTTTTCGAGAGGAAAACTGTGTAGGAAAAGCAGACTTTATGGTTTTCAAGTACAATGGGAACAAGGAGTTCAAGGTTATAGTCCTTGAACTATCTACACAGTGTGAAAAAACTGTCATAAAGTCCGAGGTAGaggaggaggagaatatggatgaaggcaaagtagctgcagaagaagatgaggaagaacatgaaggcaagacagatgatgaagacggcgaggaggaggaggatgacgacaataatagtgacaatgattataatgataacgatGAGTTTACAGAGATGGAAGAAGAGAGTGAAGAAGAACATAATTTTCAATACATGAAGGCATCAAGGAGTCAAAGTAATAGTAGAGCCTGCAAAAGGGAGACTGCAACAAGTTCCACACCCAAGATTGAGGATCCTCAAATTGAAGACTATGAATTTGATCCAGAAATGTATATTCAGTCTGGCAATCCATATTTTGAAGCAAAAGTCTATAAAAGTAGACGCAACGAAATGCATGTTCCAGCAAATGTCCTTAGAAACTCGTCCCTTACTTTTCCAGAAAAGATTACCCTTTTACCTTGCCAATGCTCCCAACGCCAGGATATTCAAAGAAATGAATTACGGAAGTATCATCTCAGCTTGTCACAACAAACACCCATATGCAGAAGATATTGGGAAGCAACAAAAGTGTCAAAGTGGAATGATGGTCGAGTATGTGTTAGAGGGTGGGGAAACTTTTGTAGGAGGCACAAGATCAAAGAAAAGGATGTATGCATCTGTGAAATTATATCAGGGGAAGACCAAGTAATAAGAACAATTCGGGTGCACGTGCTTGAACGGATGAACAGACTAAGGAATTGTACTAGCAGTAAAATTGGACATTAA | 1086 | 0.3462 | MSIVAKKYFFKVYVPEKHYERMLIPNVFVKWTRLKERIPEDVILRNGSGRVWCVKTRRIGDKLFLDEGWKAFREENCVGKADFMVFKYNGNKEFKVIVLELSTQCEKTVIKSEVEEEENMDEGKVAAEEDEEEHEGKTDDEDGEEEEDDDNNSDNDYNDNDEFTEMEEESEEEHNFQYMKASRSQSNSRACKRETATSSTPKIEDPQIEDYEFDPEMYIQSGNPYFEAKVYKSRRNEMHVPANVLRNSSLTFPEKITLLPCQCSQRQDIQRNELRKYHLSLSQQTPICRRYWEATKVSKWNDGRVCVRGWGNFCRRHKIKEKDVCICEIISGEDQVIRTIRVHVLERMNRLRNCTSSKIGH | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca05g01640 | 361 | MobiDBLite | consensus disorder prediction | 179 | 204 | - | - | |
Cca05g01640 | 361 | Gene3D | - | 211 | 349 | IPR015300 | - | |
Cca05g01640 | 361 | CDD | B3_DNA | 7 | 99 | IPR003340 | GO:0003677 | |
Cca05g01640 | 361 | SUPERFAMILY | DNA-binding pseudobarrel domain | 219 | 343 | IPR015300 | - | |
Cca05g01640 | 361 | Pfam | B3 DNA binding domain | 9 | 98 | IPR003340 | GO:0003677 | |
Cca05g01640 | 361 | SUPERFAMILY | DNA-binding pseudobarrel domain | 7 | 100 | IPR015300 | - | |
Cca05g01640 | 361 | Gene3D | - | 2 | 104 | IPR015300 | - | |
Cca05g01640 | 361 | MobiDBLite | consensus disorder prediction | 112 | 206 | - | - | |
Cca05g01640 | 361 | ProSiteProfiles | B3 DNA-binding domain profile. | 7 | 102 | IPR003340 | GO:0003677 | |
Cca05g01640 | 361 | SMART | B3_2 | 9 | 102 | IPR003340 | GO:0003677 | |
Cca05g01640 | 361 | MobiDBLite | consensus disorder prediction | 119 | 172 | - | - | |
Cca05g01640 | 361 | PANTHER | B3 DOMAIN-CONTAINING | 5 | 348 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca05g01640 | Cca-Chr5 | 35831138 | 35833305 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca05g01640 | 9 | 345 | B3 DNA Binding Superfamily | AT5G60140 | 23.955 | 1.56e-21 | 92.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Cca05g01640 | B3 | 3.5e-15 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca05g01640 | - | - | gmx:100810634 | 334.724 |