Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01638 ATGACCTCGAAGTACCATTCTCAGGTTTTGCAACTTGGGGTGAGAAATGCAGCAGATTGGCACCATTTGTTTATCTGCTGCTGCTTGTGTTTGTGGTTTCTTCTGGTGCCAGTGCTGGGTGAAGAACGTTGGGATGGAGTGGTTGTGACACAATCAAACTTCCTGGCACTTCAAGCATTCAAGCAAGAGTTGGTGGATCCCAAAGGCTTCTTGAGAAGCTGGAATGACAGCGGCTATGGAGCATGTTCTGGAGGTTGGGTTGGTATCAAGTGTGCTCAGGGACAGGTTATTGTGATCCAGCTTCCGTGGAAGGGGTTGAAGGGGCATATCACTGAGAGGATTGGCCAACTTCGGGGGCTTAGAAAGCTTAGTCTTCACGATAACCAAATTGGTGGTTCAATCCCTTCAGCACTCGGACTTCTTCTCAATCTAAGAGGAGTTCAACTCTTCAACAATAGGTTCACAGGCTCCATCCCTCCTTCTTTAGGTTCCTGTCCTTTGCTTCAGTCATTAGACCTTAGTAACAATTTGCTCACTGAGAGAATCCCTATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTTGAGCTTTAATTCCTTTTCTGGCCCAATACCAACTAGCCTAACTAGCTTAACTTCTCTCACTTACCTGTCTCTTCAACACAATAATCTCTCTGGCTCTATTCCTAACTCATGGGGTGGTAGCTTGAAGAACCATTTCTTTCGGCTTCAAAATCTGATTTCTCTTGGTCATAACCAGTTTAGCGGAGCTATCCCAAATGAAATAGGAAGCCTTTCTAGACTTAAGACCGTAGATTTTTCCAATAATGCCTTGAATGGAAGCTTGCCTGCAACTCTCTCTAATTTATCCTCACTCACTCTGTTGAATGTAGAGAACAACGACCTAGGCAATCAAATCCCAGAAGCTTTAGGCAGATTGCAAAATCTTTCTGTTCTAGTTCTGAGAAGAAATCAATTTAGTGGCCACATTCCTCAAAGTATTGGAAACATTTCAAAGCTTACACAGCTCGATTTGTCGCTGAATAATCTCAATGGTGAAATTCCAGTCTCCTTAGACAATCTGCGCAGTCTTAATCACTTAAACGTTTCTCATAACAACCTCTCTGGTCCTGTTCCAACCCTACTTGCCCATAAATTTAACTCAAGTTCATTTGAGGGAAATATTCAACTATGTGGGTACAGCCCTTCAACCCCATGTTCCTCGCCAGCTCCTTCTGGCTCGCCTTCTGAAATGTCAAAACACCATCATAAGAAACTAGGCTCCAAAGACATAATCCTCATAGTAGCGGGAGTGCTCCTTGTACTCTTGTTAACACTTTGCTGCATTCTGCTATTCTGCCTGATCAGAAAAAGAGCAACATCAAATGCAGAGAGTGGCCAGGCCACAGGGAGAGCATCTGCCACCAGGACAGAAAAAGGAGTTCCTCCTGTTGCAGGTGGTGAAGCTGAGGCAGGTGGCGAGGCTGGAGGTAAACTAGTCCATTTTGATGGACCATTGGCTTTTACAGCTGATGATCTCTTGTGTGCAACAGCAGAGATAATGGGAAAAAGCACATACGGAACTGTGTATAAGGCTACATTAGAGGATGGAAGTCAAGCTGCAGTGAAACGGTTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTTGAATCTGAAGTTGGTGTTATAGGAAGAATTCGACACCCAAATCTTTTGGCATTAAGAGCCTACTACTTGGGACCCAAAGGAGAAAAGCTTTTAGTATTTGATTACATGCCTAAGGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGGCACGAAACAGTCATTGATTGGCCGACAAGGATGAAAATAGCACAGGGAATGGCTCGTGGCTTGTTATACCTTCATTCACAGGAGAACATTATACATGGGAATCTTACGTCCAGCAATGTGCTGCTGGATGAGAACACGAATGCTAAAATAGCTGATTTTGGTCTTTCTCGGTTGATGACAACTGCTGCTAATTCTAACGTGATTGCCACTGCTGGAGCATTGGGCTACCGAGCACCTGAGCTCTCAAAGCTTAAAAAAGCCAACACAAAAACTGACGTATACAGTCTTGGTGTCATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCTATTGTCAAAGAGGAGTGGACAAATGAGGTTTTCGATGTAGAGTTGATGAGAGATGCTTCAACATATGGCGACGAGATGCTAAACACGTTGAAGCTTGCTTTGCACTGTGTTGATCCTTCTCCATCAGCACGGCCAGAAGTTCAGCAAGTCCTTCAGCAGCTAGAAGAGATTAGACCAGAGATATCAGCCAGTTCGGGTGATGATGGTGCTATCCCTTCGACCAGTGAATAA 2424 0.446 MTSKYHSQVLQLGVRNAADWHHLFICCCLCLWFLLVPVLGEERWDGVVVTQSNFLALQAFKQELVDPKGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLKGHITERIGQLRGLRKLSLHDNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPPSLGSCPLLQSLDLSNNLLTERIPMSLGNATKLYWLNLSFNSFSGPIPTSLTSLTSLTYLSLQHNNLSGSIPNSWGGSLKNHFFRLQNLISLGHNQFSGAIPNEIGSLSRLKTVDFSNNALNGSLPATLSNLSSLTLLNVENNDLGNQIPEALGRLQNLSVLVLRRNQFSGHIPQSIGNISKLTQLDLSLNNLNGEIPVSLDNLRSLNHLNVSHNNLSGPVPTLLAHKFNSSSFEGNIQLCGYSPSTPCSSPAPSGSPSEMSKHHHKKLGSKDIILIVAGVLLVLLLTLCCILLFCLIRKRATSNAESGQATGRASATRTEKGVPPVAGGEAEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVGVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLASFLHARGHETVIDWPTRMKIAQGMARGLLYLHSQENIIHGNLTSSNVLLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGAIPSTSE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01638 807 MobiDBLite consensus disorder prediction 466 494 - -
Cca05g01638 807 Gene3D Ribonuclease Inhibitor 51 207 IPR032675 -
Cca05g01638 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 23 798 - -
Cca05g01638 807 Pfam Protein tyrosine and serine/threonine kinase 520 785 IPR001245 GO:0004672|GO:0006468
Cca05g01638 807 Gene3D Transferase(Phosphotransferase) domain 1 595 799 - -
Cca05g01638 807 MobiDBLite consensus disorder prediction 788 807 - -
Cca05g01638 807 Pfam Leucine rich repeat N-terminal domain 55 91 IPR013210 -
Cca05g01638 807 Pfam Leucine rich repeat 317 376 IPR001611 GO:0005515
Cca05g01638 807 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Cca05g01638 807 Gene3D Ribonuclease Inhibitor 208 306 IPR032675 -
Cca05g01638 807 Gene3D Ribonuclease Inhibitor 307 408 IPR032675 -
Cca05g01638 807 SMART LRR_typ_2 213 236 IPR003591 -
Cca05g01638 807 SMART LRR_typ_2 291 315 IPR003591 -
Cca05g01638 807 SMART LRR_typ_2 363 386 IPR003591 -
Cca05g01638 807 SMART LRR_typ_2 267 290 IPR003591 -
Cca05g01638 807 SMART LRR_typ_2 117 141 IPR003591 -
Cca05g01638 807 ProSiteProfiles Protein kinase domain profile. 517 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01638 807 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 23 798 - -
Cca05g01638 807 Gene3D Phosphorylase Kinase; domain 1 523 594 - -
Cca05g01638 807 SUPERFAMILY L domain-like 96 384 - -
Cca05g01638 807 CDD STKc_IRAK 523 788 - -
Cca05g01638 807 SUPERFAMILY Protein kinase-like (PK-like) 521 789 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01638 Cca-Chr5 35824547 35827315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01638 44 790 Receptor kinase-like Gene Family AT3G51740 63.307 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g01638 PK_Tyr_Ser-Thr 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01638 - - gmx:100811174 1259.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01638 05 35824547 35827315 Cca01g01959 01 45831415 45835433 ECH
Cca05g01638 05 35824547 35827315 Cca05g01638 05 35824547 35827315 ECH
Cca01g00251 01 2602656 2605803 Cca05g01638 05 35824547 35827315 PCT