Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01635 ATGGGTGCTTATGATCAAGTTTCTCTTAAGCCCTTGGATTCTTCTAGAAAGAGGAAAAGTAGGAGCAGAGGGGATGGGTCTAGATCCGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGGCAAAGATGATGGTAGGCCAACTCGTAAGGCACCAGCTAAAGGTTCAAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCCCAAAACTCTCAGTGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGCAAGTGGGTTGGTGAGATTAGGGAGCCAAATAGAGGAAATAGGCTTTGGTTGGGTACTTTCTCTACTGCCCAAGAAGCTGCTCTTGCCTATGATGAAGCTGCTAGAGCCATGTATGGTCCATGTGCACGTCTTAACTTCCCCCACATATCAGATTATGCTTCTGTCAAGGAATCGTTGAAGGAGTCATCCTTGGCTGCGTCGTCTTCTTGTTCTTCGGCCGCGACGGCGGTCTCTGAGACTACTACCACTACATCAAATCAATCAGAGGTTTGTGCAGCTGAGGATGTTAAAGAGAAGTCCCGAGGTGTCAATGTGAATGATAAGGTTAATGCATGTCATAAGGATTATGAATCTGCCTCGCCAACTAGTAGAATGAAGCAAGAGCCTAGGGATGAGCATGTGGATCTCTTAGACCCGGGGGCTGTGGAAGTTCAAGATGCAAGACCAGAAGCAACACATGATGCTGGGCAGGTTGCCGAGGATGTAAATAGAGATCAGATGGACTTTTCATGGATTGATAACTTTGATTTCAATGATGATTACTTGAAGAGTTTTTCCACGGATGAGTTATTTCAGGTGGATGAGCTTTTGGGGCATTTAGATAATAACCCAATTGATGACACAGGGTTGATGCAAGGTTTGGATTTTGGACAAATGGGTTTTCCTGGAAATGGTAATAATCCTCAGGTTGATACGCCTTCAAGCTTTTTCTATCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGTAGTTTGCCCCATATGGATCATACATCATCTGGTGTTGATTATGGATTAGATTTCTTGAAAATAGTAGAGCCAGGGGACTATAACGCTGGAGAACCACCACAATTTCTTAACTTGGATGATGATCTGAACAATGATTCAAAGGGAATTCAAGCAATGAAGCATGACTAG 1182 0.4416 MGAYDQVSLKPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSGKDDGRPTRKAPAKGSKKGCMKGKGGPQNSQCNYRGVRQRTWGKWVGEIREPNRGNRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHISDYASVKESLKESSLAASSSCSSAATAVSETTTTTSNQSEVCAAEDVKEKSRGVNVNDKVNACHKDYESASPTSRMKQEPRDEHVDLLDPGAVEVQDARPEATHDAGQVAEDVNRDQMDFSWIDNFDFNDDYLKSFSTDELFQVDELLGHLDNNPIDDTGLMQGLDFGQMGFPGNGNNPQVDTPSSFFYQLQNPDAKLLGSLPHMDHTSSGVDYGLDFLKIVEPGDYNAGEPPQFLNLDDDLNNDSKGIQAMKHD 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01635 393 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 MobiDBLite consensus disorder prediction 1 30 - -
Cca05g01635 393 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 MobiDBLite consensus disorder prediction 11 26 - -
Cca05g01635 393 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Cca05g01635 393 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Cca05g01635 393 MobiDBLite consensus disorder prediction 44 80 - -
Cca05g01635 393 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 364 - -
Cca05g01635 393 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Cca05g01635 393 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01635 Cca-Chr5 35800164 35802501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01635 16 364 AP2-EREBP Transcription Factor Family AT2G40340 42.373 9.00e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g01635 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01635 - K09286 gmx:100800134 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01635 05 35800164 35802501 Cca05g01635 05 35800164 35802501 ECH