Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01634 ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGAATCCATTCAGTTCTCACCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAAGTTGAGGGAGGAACACTGTCCATGCATTTTGTAGATAATTATCATATGGCTATGGAGAAAGGACCCGTGTCAGACATTCGGATAAGGTCAAGGAAGGCTACTTTATCAGATTGCTCCCGATTTTTACGTCCTGGAATTGACGTATGTGTACTATCAGCTCCTCAACAATCTGATGATTCAGATGCAATTAATGTGGACCCTGTTTGGGCTGATGCTAAAATAAGTTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCTTGTCAGTTTTATGTGAACTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAAGTCTAAGCAAGGAGATTAAAGTTGTTGGAATCAATCAAATATCCATCCTACAAAAACTTGAACACATTCCTTGTGAAGGTCAGCACCACAGGTGGGATTCATCTGAGGACTGCTCTATAATATCACATACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTACTTCAGTTATAAGGAAGGTTTCATTCTGTGTGAGATCTCTTGAAGACAAGCTTGTGTATCAAATTTTGGGAAGAGATTCTGTTAGCACTTCATTGGACAATGCATCTCACATTGCTGTTGTGAGTTTCAAAACAGAGAATGGCCTGTTAGTGCCTATTGTTTCTGAATTAGCTACACCAAAAACCAAAAGGATTGATCTTGTTCAGGAATCCAATGAAGATAAAGTATCACCATCTTATAATGTTGAGGGATTAAGGCGTTCCAAGCGCCGGAATGTGCAGCCTGAGCGCTACCTTGGTTGCAACAATGTATCCGAGATTGATGTTGGTTCTTTTAGAAACAGACCACCAGTTAAGATAGACACTTGGAAGgatgatgatgatgatgatgaACTGCATATACCATTAGCATGCCTGTTTGGTTTGCAGCAAAACTGTCTAGAAGAGAATACTGATCATCATCAAAGGGTAAGGAAGGTGAGTGCTTGCCGGGAGCTTGTGGTGTACAGTAGAAAGAGGCCTAAAATCCGGAAGGTAAAGTCAGGAGATGATGCTCAAAGTGAACATCAAAATCATCTTGCAATTATTCCTCTTCCTGATCAAGATGATCCAGTAGCCATTGAGCATGGTGATCTAAACGAGAAGGTTACTAGAAGTTATGGTCATGAATCCTCTGAAATTTCTTCCAAATATTATCATCTAACTTGTAGTGGTACCCCTAAATCAAAGAGTAATGATATTAAATTGTTAACTCTTGAGCCTCATAATCATACAACAAAGCCAGAGGATGCAGAGAAGACTGATGATTTGTCATTGAGATATAATAATTATAGTTATGGCGCCCCTAAGTCACAGAGGAAGAATTTGTGTGGTCTGGATGATATGGTGGATCTTGGAAACAAATGGGAAGGGATCAATTCCAATAAAGGAGCTTATGGGAAAAAACCTCGTATAACATATTTAAGAAGTAAGAATCATGAAGAAGAAAGAAGATACCATTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCTTACTTAAAGAATATTAATACAAAACCATCCAATGAAGAACCATCTATTGCTGACCAGTGGAAGCAAAGCAACACAACTAGCAACACTGACCAAAAGATTGAAGAAGAGATACTGGATGAAGAGGATGCGGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCAAGTTATCTAGAAGACACAGAGGATTTAAATACTGTTGTTCTCAATGAGACTACAGAAAAGCCGAATGAAGGTTGTCCACATGATTTCAGATTGAATGAAGAAATTGGAATTTACTGCTATAGATGCGGCCTTGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAACATTCAGTGTGTCACCAAGAGGAGAAACAAAGTGCTGAAGAAGATTCAAGGACTAAGGCTGATGAAGAGGATGACTATGATCTTTTCCCAAATCTTGTTTCTCCTGAGGAACCTATGTCTGAAGAAAATGACAACGTTTGGTCATTAATTCCTGAACTTAGAGAAAAGTTGCATGCCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGATCCAGGACTTATGGAAGCATCATCCAAAAGAAGAGGTGGCTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCTCTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATCAAGTGGAATATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATGGCTGTTATTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAACATGTTTTGGATTGTCTCGAGAAGATACAAAAATGGCATTCACATCCGAGTGTTCTCATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCTCACAGAAAATACATGGCTAAGGTATTGAGGGAAAGCCCTGGGATCATGGTGTTGGATGAAGGGCACAATCCAAGAAGCACTAAATCTAGGTTGAGAAAAGTTCTGATGAAAGTACAAACTGATTTGAGAATACTTCTTTCTGGTACATTGTTTCAGAACAATTTTTGTGAATACTTCAACACTTTGTGCTTGGCAAGACCAAAGTTTATTAATGAAGTACTGAAAGCACTAGACCTTAAATACAGGAGGAAAGGGAAAGTAGCAAAGAAAGCACGTCATTTATTGGAGTCACGAGCTAGAAAATTCTTCTTAGACAAAATTGCCAAGAAAATTGACTCAAATAATGGTAGGGAGAGGCAACAGGGTCTAAAAATGTTGAGGAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGTAGTTCTGATGGTCTACCTGGCTTGCAAATTTATACATTGCTCATGAATTCAACTGATACACAGCATGAGATTTTGCAGAAGCTGCACAAAAAAATGGCCAAGTGCAATGGATACCCTTTAGAGTTAGAACTGTTGATAACTCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCTCTCAGGAGCAATTGATGGAGCTAGAGAAATGCAAATTTGATCTAAAAATGGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGTGTTGTCAAGAAGGAGAAGGTTCTCATATTCTGCCACAATATTGCACCTGTGAGGTTATTTATGGAATATTTTGAGAAGTACTTTGGATGGCAAAAGGGTAGGGAAGTGTTGGTGCTAACCGGGGAACTAGAACTCTTTGAAAGAGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGGGTGTCAAAGATACTCCTTGCTTCAATCACAGCTTGTGCTGAAGGCATTAGTTTAACTGCTGCTTCTCGTGTGATCATGTTGGACTCAGAATGGAACCCTTCAAAAACAAAGCAAGCTATTGCACGAGCCTTTCGTCCTGGTCAGCAGAAAGTGGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAGGATAAGTACCGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATCTTTAGTGAGGCATTTGTGGAGGACCCTTCCCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTGAGGGAGATGGTTGCTGAGGACAAGTCTAAATCATTTCATATGATCATGAAGAATGAAAAAGCTTCTTCTACCAACAAATAA 3933 0.3936 MAHRKRRLDQLKNPFSSHPFEAVAFGSWQAVEFIKVEGGTLSMHFVDNYHMAMEKGPVSDIRIRSRKATLSDCSRFLRPGIDVCVLSAPQQSDDSDAINVDPVWADAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRSLSKEIKVVGINQISILQKLEHIPCEGQHHRWDSSEDCSIISHTKLLLGKVLCDLSWLVVTSVIRKVSFCVRSLEDKLVYQILGRDSVSTSLDNASHIAVVSFKTENGLLVPIVSELATPKTKRIDLVQESNEDKVSPSYNVEGLRRSKRRNVQPERYLGCNNVSEIDVGSFRNRPPVKIDTWKDDDDDDELHIPLACLFGLQQNCLEENTDHHQRVRKVSACRELVVYSRKRPKIRKVKSGDDAQSEHQNHLAIIPLPDQDDPVAIEHGDLNEKVTRSYGHESSEISSKYYHLTCSGTPKSKSNDIKLLTLEPHNHTTKPEDAEKTDDLSLRYNNYSYGAPKSQRKNLCGLDDMVDLGNKWEGINSNKGAYGKKPRITYLRSKNHEEERRYHYKDRTLNAAAYKDLINSYLKNINTKPSNEEPSIADQWKQSNTTSNTDQKIEEEILDEEDAEEVSEMDMLWRELEVSLASSYLEDTEDLNTVVLNETTEKPNEGCPHDFRLNEEIGIYCYRCGLVSTEIKYITPPFIQHSVCHQEEKQSAEEDSRTKADEEDDYDLFPNLVSPEEPMSEENDNVWSLIPELREKLHAHQKKAFEFLWQNIAGSMDPGLMEASSKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWNIPIPVYLIHGRRTYRVFKQKSMAVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTDLRILLSGTLFQNNFCEYFNTLCLARPKFINEVLKALDLKYRRKGKVAKKARHLLESRARKFFLDKIAKKIDSNNGRERQQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILQKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFSQEQLMELEKCKFDLKMGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVRLFMEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDKSKSFHMIMKNEKASSTNK 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01634 1310 Gene3D - 703 995 IPR038718 -
Cca05g01634 1310 CDD SF2_C_SNF 1103 1239 - -
Cca05g01634 1310 MobiDBLite consensus disorder prediction 676 710 - -
Cca05g01634 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 20 1305 IPR044567 GO:0080188
Cca05g01634 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 20 1305 - -
Cca05g01634 1310 Pfam Helicase conserved C-terminal domain 1111 1227 IPR001650 -
Cca05g01634 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1289 IPR027417 -
Cca05g01634 1310 Gene3D - 1032 1310 IPR027417 -
Cca05g01634 1310 SMART helicmild6 1139 1228 IPR001650 -
Cca05g01634 1310 SMART ultradead3 724 967 IPR014001 -
Cca05g01634 1310 MobiDBLite consensus disorder prediction 560 583 - -
Cca05g01634 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 708 955 IPR027417 -
Cca05g01634 1310 CDD DEXHc_ATRX-like 728 958 - -
Cca05g01634 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1115 1275 IPR001650 -
Cca05g01634 1310 MobiDBLite consensus disorder prediction 677 697 - -
Cca05g01634 1310 Pfam SNF2-related domain 741 996 IPR000330 GO:0005524|GO:0140658
Cca05g01634 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 753 953 IPR014001 -
Cca05g01634 1310 MobiDBLite consensus disorder prediction 560 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01634 Cca-Chr5 35776394 35784981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01634 1107 1246 RAD5 or RAD16-like Gene Family AT5G43530 33.566 2.16e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca05g01634 SNF2_N 2.2e-17 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01634 05 35776394 35784981 Cca05g01634 05 35776394 35784981 ECH
Cca01g00255 01 2640687 2645791 Cca05g01634 05 35776394 35784981 PCT