Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01630 ATGGGTGGAAGTTCCCCTTGTGCCTCATGCAAATTGCTGAGACGCCGTTGCACAAAAGATTGCACCTTCGCTCCTTATTTTCCTTCTGATGATCCCCAAAAGTTTGCCATAGTTCACAAGGTTTTTGGAGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCACCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATATTCTGCATCCAGATGGAACATGAGTCAGTGATGCCAACCTCAGAAATTGATCTAGACCACAAGTCTTACTTGTTCCAAAATGACTTCACTCAGTTTCTTGGTTTTGGCACTTCCAGCAATGTAATTCACAACTCTCTTGAGCAATTTTAG 468 0.4338 MGGSSPCASCKLLRRRCTKDCTFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEIFCIQMEHESVMPTSEIDLDHKSYLFQNDFTQFLGFGTSSNVIHNSLEQF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01630 155 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cca05g01630 155 Coils Coil 85 105 - -
Cca05g01630 155 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cca05g01630 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 154 - -
Cca05g01630 155 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01630 Cca-Chr5 35709761 35710858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01630 3 131 AS2 family AT2G30130 81.203 7.69e-77 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01630 LOB 7e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01630 05 35709761 35710858 Cca05g01630 05 35709761 35710858 ECH
Cca01g00261 01 2760753 2761762 Cca05g01630 05 35709761 35710858 PCT