Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01621 ATGGGCAAGAACAGGAAATTCAGTCGCTTCAAGGATCTTTCGATGGCTTTGCGCTTTGTGGCGGTTTTTTTCTTGTTTCAGGACTTGGATTTGTGCTCTTCTTTAAATGAAGAAGGTAATGCTCTTTTGAAGTTGAGGCAGAGAATAGTGAGTGACCCTTTTGGTGCTTTGTCAAATTGGATTCAGGATGAAGTCTCTGTTGACCCTTGTAATTGGTTCGGAGTTGAGTGCTCAGATGGCAAAGTTGTGACCTTGAATTTGAAGGATCTATGCCTTGGAGGAACTCTCGGGCCCGAGATTGTGAACCTTGTTCACATAAAGTCTATTATTTTGCGAAACAACTCTTTCTATGGGACCATCCCTGAAGGATTTGTAGACTTAAAAGAATTGGAGGTTTTGGATTTGGGATACAACAACTTCAGTGGACATCTACCTGCGGATCTTGGGAGTAATATCTCACTGGCAATCCTTTTGCTGGATAACAATGAATTTCTTGTTGGTTTCTCTCCCGAAATCAATGAGCTGAGGATGCTTTCTGAATGCCAAGTAGATGAAAATCAGCTAACTAATGCTGCTAATATGCCAGCTTGTCCAGAAAGAGCCATCACATGGCATATTGGTCAAGGTAAAGGTACTCGTGGCCTACTAGGAAATGATAAATCAGCACTTTTTCCTCCCCATCCTAGTCGTGTGCCTAATCCACTTCATTCTAATAAAAAAGAGGCTTTTAATCGTGCCAAGAATCCAGTTGTTGAGAGCCATTCTCCTGCTTCCGCACCAGCCTCAGCAAAACCACCAGTGCCAACAAAGCCAGCTCCCCCTAGGGAAAAGGCTTTTCATTCTAAAACTAAAAGCACCTCATCAAATATTCATATTTTGGCTGGAGTAATAGGTGGTGTTGTGTTTCTCCTTATTTCAAGCATTGGCATATATCTTTGTAAAACCAAAGTAGCTAATGTCAGACCTTGGGCCACGGGACTAAGTGGACAGCTTCAGAAGGCATTTGTAACTGGTGTGCAAAAGCTAAAGAGAACAGATCTTGAAGCAGCATGTGAAGATTTTAGCAATGTAATTGGTACTTCAGCCGTTGGTCCGCTGTACAAAGGAACTTTGTCTAGTGGCGTTGAAATAGCTGTAGCTTGTGTTCCGGTGACATCATCCAAGAATTGGTCAAAGACTTTAGAAGCTCAATTTAGAAAGAAGCTAGATACATTATCGAAAGTGAACCACAAGAATTTTGTCAATCTTATTGGATATTGTGAAGAAGAGGAGCCTTTCACCAGAATGTTGGTTTTTGAATATGCCCCAAATGGAACACTATTTGAACATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGGAACAAGACTTAGAGTTGCAGTGGGTATGGCTTATTGCCTTCAACAGATGCACGAGTTGGACCCTCCTATGGCCCTTATGAAGCTGAATTCTTCAGCTGTTTACTTAACAGATGACTATGCTGCCAAACTCTCAGATTTGAGTTTCTCAAACGACACAGCCTCAGCTGAGACAAAAGCAAATGACATGCCAATAGCAAGTCCAGAAAGCAATGTCTATAGCTTTGGTGTTTTGTTGTTTGAAATGGTTACTGGTCGCATCCCCTATTCAGTGGAACAAAGGGACTCACTTGAAAACTGGGCATCGCACTATTTACAAGGGGACCAGCCCCTCAAAGAAATGGTGGATCCAATTCTAGTATCTTACCAAGAGGATCAACTAGAACAAGTTTCTGCTTTGATTAAAACTTGTGTGGACCCTGATCCAGAGCAGAGACCAACAATGAAAGATGTCAGTGAGAGACTCAGAGAGATAACAAAAATAACACCTGAATCAGCAGTTCCGAAACTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTGCTTCTTCAGAAGCACGTTAA 1923 0.4197 MGKNRKFSRFKDLSMALRFVAVFFLFQDLDLCSSLNEEGNALLKLRQRIVSDPFGALSNWIQDEVSVDPCNWFGVECSDGKVVTLNLKDLCLGGTLGPEIVNLVHIKSIILRNNSFYGTIPEGFVDLKELEVLDLGYNNFSGHLPADLGSNISLAILLLDNNEFLVGFSPEINELRMLSECQVDENQLTNAANMPACPERAITWHIGQGKGTRGLLGNDKSALFPPHPSRVPNPLHSNKKEAFNRAKNPVVESHSPASAPASAKPPVPTKPAPPREKAFHSKTKSTSSNIHILAGVIGGVVFLLISSIGIYLCKTKVANVRPWATGLSGQLQKAFVTGVQKLKRTDLEAACEDFSNVIGTSAVGPLYKGTLSSGVEIAVACVPVTSSKNWSKTLEAQFRKKLDTLSKVNHKNFVNLIGYCEEEEPFTRMLVFEYAPNGTLFEHLHIKEAEHLDWGTRLRVAVGMAYCLQQMHELDPPMALMKLNSSAVYLTDDYAAKLSDLSFSNDTASAETKANDMPIASPESNVYSFGVLLFEMVTGRIPYSVEQRDSLENWASHYLQGDQPLKEMVDPILVSYQEDQLEQVSALIKTCVDPDPEQRPTMKDVSERLREITKITPESAVPKLSPLWWAELEIASSEAR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01621 640 Gene3D Ribonuclease Inhibitor 34 204 IPR032675 -
Cca05g01621 640 SUPERFAMILY Protein kinase-like (PK-like) 338 609 IPR011009 -
Cca05g01621 640 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Cca05g01621 640 Pfam Protein tyrosine and serine/threonine kinase 354 609 IPR001245 GO:0004672|GO:0006468
Cca05g01621 640 Gene3D Transferase(Phosphotransferase) domain 1 435 621 - -
Cca05g01621 640 MobiDBLite consensus disorder prediction 249 284 - -
Cca05g01621 640 MobiDBLite consensus disorder prediction 217 237 - -
Cca05g01621 640 PANTHER PROTEIN MALE DISCOVERER 2 1 636 - -
Cca05g01621 640 ProSiteProfiles Protein kinase domain profile. 352 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01621 640 SUPERFAMILY L domain-like 43 191 - -
Cca05g01621 640 Gene3D Phosphorylase Kinase; domain 1 325 434 - -
Cca05g01621 640 PANTHER LRR RECEPTOR-LIKE KINASE 1 636 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01621 Cca-Chr5 35633222 35637660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01621 17 613 Receptor kinase-like Gene Family AT1G66830 24.928 1.68e-45 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Cca05g01621 PK_Tyr_Ser-Thr 8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01621 - - gmx:100820416 996.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01621 05 35633222 35637660 Cca05g01621 05 35633222 35637660 ECH
Cca01g00269 01 2844360 2848433 Cca05g01621 05 35633222 35637660 PCT