Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01618 ATGAATAATGTTCTATCATCGTTGATGGTCTCCCCAGACTTGTTACCATCTGGATCCTTGCTAGGTTCATTGATTCACTTATCCAATGAAGTTGGCTCAATGGAGAAGTTTCCCTTGGTGCACACAAGGAATGTTTCATCCATGATAAGGAGGATCAAGCTCCTCTCTTCTTTGTTTGAAGAGATTCAAGAAACGGGTACTCCACTTCCTCCCTCATCAATCCTTTGTCTCACTGAACTCTTCTCTGTGATCAGAAGAGTGAAGATTTTGATCCAAGAATGCAAGGATGGAAGCTCTCTTTGGAGTCTCATACAGTTAGAGTTCATTGCAAACCAATTTTATGTGCTTGTAAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGTTTGCTTAATGTAACATCAGATATAAGGGAACAAGTGGAGCTTCTTCATAAGCAAGCAAAGAGGGTTGAGTTACTCATTGATCCTAGAGAGATTCAAAGAAGAGAACATCTAATACAAGTGATGGCCAACAACAGTTTTCAAAACAATAAGAACAAGGGTTTTATTGACTTTGACAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCCCTTCAGATTATGATGGAGAAATATCCAAGTTAGAGGCTGAAGCTCAGAATCAAGCTGGCACAGGAGGACTAATTGTTGTATCCAATATAAATAATCTCATATCTCTTGTCTCTTATTCAAAATCCATGATATTCAGAGATGGAGAGTGTGACAGAAAAAATGAAGATTGTAAGCCACTATCTGCATTTTTACACAACAAAGTCCATGATAGTTCTTCATCCTCTCAGTCCATGACGCCAAATGTTCCTGATGAATTTCGTTGCCCCATTTCACTTGACTTAATGAGGGACCCCGTGATTGTGTCATCGGGACACACTTATGATAGAACCTCAATTGCACAATGGATAAACTCTGGCCATCACAGTTGCCCCAAAAGTGGGCAAAGGCTAATTCACACTGCTCTAATACCAAACTATGCATTAAAGAGCCTCGTTCATCAATGGTGCTATGACAACAATGTCCCAGTGAATGAGCCTACAACTGAGGGAAACAACATTAGCAAGAAGAATTTGAACGAAGAAGCTATTGATCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTAGTTGGAAAATTGGCAACCGGTTCTGCTGATATCCAAAGACAAGCTGCATATGAACTTCGATTACTCGCGAAAACCGGCATGGATAACCGGAGAGTCATAGCCGAGGTAGGGGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGACTCAAGGATCCAAGAGCACGCTGTGACAGCTTTGTTCAACCTTTCAATATTCGACAACAACAAGCTTCTGATCATGGCAGCAGGAGCAGTTGGCAACATAGTAGAAGTACTAGAATCGGGGAAGACAATGGAGGCAAGGGAAAATGCAGCAGCATCAATATATAGCTTGTCAATGGTAGATGAGTGCAAAGTGCAAATTGGAGGAAGAGCAAAAGTAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGTACTCCAATTGGGAAAAGAGATGCTGCAAGTGCACTTTTCAACCTTGCAGTGTACAATCCTAACAAGGGAAACATTGTTGAAGCTGGTGCAGTTCCTGTGTTGGTTGAGTTGTTGATGGATGATAAGGCTGGCGTAACAGATGATGCACTTGCTGTGCTAGCTTTGCTTCTTGGATGCTCTCAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGATCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGATTGTGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTATTGGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGCTGTTGATGGCTCTTTGAGAGCTAGGAGAAAGGCTGATGCATTACTTAGGTTCCTCAATAGGTGCTGCTCTCAGCCTCATCATTCTGTTTGA 2052 0.4191 MNNVLSSLMVSPDLLPSGSLLGSLIHLSNEVGSMEKFPLVHTRNVSSMIRRIKLLSSLFEEIQETGTPLPPSSILCLTELFSVIRRVKILIQECKDGSSLWSLIQLEFIANQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKRVELLIDPREIQRREHLIQVMANNSFQNNKNKGFIDFDKVEEILSSIGLRTPSDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGECDRKNEDCKPLSAFLHNKVHDSSSSSQSMTPNVPDEFRCPISLDLMRDPVIVSSGHTYDRTSIAQWINSGHHSCPKSGQRLIHTALIPNYALKSLVHQWCYDNNVPVNEPTTEGNNISKKNLNEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMDNRRVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKLLIMAAGAVGNIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRAKVIPALVGLLKEGTPIGKRDAASALFNLAVYNPNKGNIVEAGAVPVLVELLMDDKAGVTDDALAVLALLLGCSQGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAVDGSLRARRKADALLRFLNRCCSQPHHSV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01618 683 SMART arm_5 509 547 IPR000225 GO:0005515
Cca05g01618 683 SMART arm_5 589 630 IPR000225 GO:0005515
Cca05g01618 683 SMART arm_5 423 463 IPR000225 GO:0005515
Cca05g01618 683 SMART arm_5 382 421 IPR000225 GO:0005515
Cca05g01618 683 SMART arm_5 548 588 IPR000225 GO:0005515
Cca05g01618 683 PANTHER U BOX DOMAIN-CONTAINING 18 681 - -
Cca05g01618 683 CDD RING-Ubox_PUB 287 329 IPR045210 -
Cca05g01618 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Cca05g01618 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Cca05g01618 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Cca05g01618 683 SUPERFAMILY RING/U-box 271 357 - -
Cca05g01618 683 Gene3D - 365 516 IPR011989 -
Cca05g01618 683 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Cca05g01618 683 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Cca05g01618 683 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 18 681 - -
Cca05g01618 683 Pfam Armadillo/beta-catenin-like repeat 425 462 IPR000225 GO:0005515
Cca05g01618 683 Pfam Armadillo/beta-catenin-like repeat 549 584 IPR000225 GO:0005515
Cca05g01618 683 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Cca05g01618 683 SUPERFAMILY ARM repeat 394 672 IPR016024 -
Cca05g01618 683 Gene3D - 517 680 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01618 Cca-Chr5 35608377 35610571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01618 23 678 U-box Gene Family AT3G46510 37.915 3.34e-130 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01618 - - gmx:100793498 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01618 05 35608377 35610571 Cca05g01618 05 35608377 35610571 ECH