Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01617 ATGAAGAGTTACGAGCCACGTTCAAGTTCTTCTTGTGCAGCGTGCAAGTTCTTGAAGAGAAGGTGCATCCCCAATTGTATATTTGCACCTTACTTTCGGTCCGACGAGTGCAAGAAATTCGCGAAGGTGCACAAGGTGTTTGGTGCGAGCAATGTGAGCAAGATCCTGGTTGAGGTGCCGGAGGAGCAGAGAGAGGACACGGTGAATTCGCTTGCTTATGAGGCAGAAGCAAGGCTTAGGGACCCAGTTTATGGATGCATTGGAGCCATAGCACTGTTGCAAAGGAAGATGGTGGAGcttcaacatgatcttgccattgctaaagatcgtctagctcgctatgttgctgctgctactgctactactactattactactgaTCATTCCTTGAATGCTCATGTTAGTTTGCCACCCTTACCTGAATTTTTCTCTTGTGGGGACTTCAATGATAACTTCTGCCACTCCTCTTCGTCTCAGTTGTCTTTGACTAGACATGAAACGGTGGATGATTTCATTCAAATCCCATATATATTTTGA 537 0.3892 MKSYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYVAAATATTTITTDHSLNAHVSLPPLPEFFSCGDFNDNFCHSSSSQLSLTRHETVDDFIQIPYIF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01617 178 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Cca05g01617 178 Coils Coil 90 110 - -
Cca05g01617 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 171 - -
Cca05g01617 178 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Cca05g01617 178 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01617 Cca-Chr5 35593857 35595363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01617 1 177 AS2 family AT3G11090 55.367 2.65e-63 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca05g01617 LOB 4.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01617 - - gmx:100777635 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01617 05 35593857 35595363 Cca05g01617 05 35593857 35595363 ECH