Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01616 ATGGGAAGTTCCGTGCGTGTGAAAGAAGCATCGGTGGTAACACCTTGCGAGCCCACACCATCAAGTGTGTTGGCTCTATCCGCTCTCGATTCGCAACTCTTCCTTCGTTTCACCATAGAGTATCTCTTCGTCTACGAGCCTCGCTCCAGCGTGGACCGGGCCGCCACCACGGCCTGTTTGAAACAAGCATTAGCCAGAGCACTGGTTCCCTACTACCCCTTCGCGGGCCGGGTCAGGCCCACTCCCGACGGGCCGGGCCTCGAGGTGGTGTGCGCAGCCCAAGGCGCCGTCTTCATAGAAGCTTCCGCTGAGCGTTACACCGCCAACGACTTCGAGAAAGCTCCCAAAACGGTTACACACTGGAGGGCGCTGCTGTCGCTCCACGTGGCGGATGTTCTCAAGGGATCGCCGCCGCTGGTGGTGCAGCTCACGTGGCTAGGCGGCGGAGGCGCCGCCCTCGGCGTCGGGATCAACCACTGCCTCTGCGACGGGATCGGAAGCGCGGAGTTTCTAAACTACTTGGCGGAGTTAGCTAACGGGAAAAGCGAGTGGTGGTCGAAAGTACCTAAACCTGTTTGGGAGCGTCACCTTCTGAACCCGACGCGTGGGAAGCAGACGCGGGTTGACCCGGCGAGTCACCCCGAGTTTGAGCGAGTTCCGGATTTGTGCGGCGGGTTCATGAAGAAAGTCTCGACCGGGCTTAGACCAACCTCGGTTACTTTCGACAAGAGGAGGCTGAGCGAGCTGAAGAGGTTGGCTGGTTGCACGAGTGAACCCGGGGAGTCGGTGCGTTTCACGTCGTTCGAGGTGCTGGCGGCGCACGTGTGGAGAAGCTGGGCGAGGGCGCTGAAGTTTCCGGGGAACCAGGTTTTGAAGCTGGTGTTTAGTGTAAACGTGCGGAAGCATGTTCGGCCGTGTTTGGGAGAGGGGTATTATGGGAACGCGTTTGTTTTGGGGTGCGCGGAGACGAGTGCGAAGGAGTTGGAGGAGAGGGGCATCGGGTACGGGTCGGGTCTGGTGAAGCGGGCGAAGGAGAGGGTGGGGAACGAACACGTGCGGGGCGTGATCGAGTGGGTGTGGGAGAGGAAAGCGTGTCCTGACCCTGTGGGGGTGTTGATACTGTCGCAGTGGTCGAGGCTGGGGTTGGAGAACGTTGACGTGGGTTTGGGGAAGCCGGTTCACGTGGGACCCGTGTGCTGCGATAGGTACTGTTTGTTTTTGCCGGTGAGGGATGAGTGTGTGAGTGTCAAGGTCATGGTGGCTGTCCCCACTTCTGCCGTTGACAATTACGAGCTTTTCATGCGTGCGTCGCACCTGTGA 1320 0.5985 MGSSVRVKEASVVTPCEPTPSSVLALSALDSQLFLRFTIEYLFVYEPRSSVDRAATTACLKQALARALVPYYPFAGRVRPTPDGPGLEVVCAAQGAVFIEASAERYTANDFEKAPKTVTHWRALLSLHVADVLKGSPPLVVQLTWLGGGGAALGVGINHCLCDGIGSAEFLNYLAELANGKSEWWSKVPKPVWERHLLNPTRGKQTRVDPASHPEFERVPDLCGGFMKKVSTGLRPTSVTFDKRRLSELKRLAGCTSEPGESVRFTSFEVLAAHVWRSWARALKFPGNQVLKLVFSVNVRKHVRPCLGEGYYGNAFVLGCAETSAKELEERGIGYGSGLVKRAKERVGNEHVRGVIEWVWERKACPDPVGVLILSQWSRLGLENVDVGLGKPVHVGPVCCDRYCLFLPVRDECVSVKVMVAVPTSAVDNYELFMRASHL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01616 439 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 433 - -
Cca05g01616 439 Pfam Transferase family 4 428 - -
Cca05g01616 439 Gene3D - 228 434 IPR023213 -
Cca05g01616 439 Gene3D - 2 218 IPR023213 -
Cca05g01616 439 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01616 Cca-Chr5 35579492 35581246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01616 5 434 Monolignol Biosynthesis Gene Families AT5G48930 26.351 6.51e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01616 - - gmx:100817048 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01616 05 35579492 35581246 Cca05g01616 05 35579492 35581246 ECH
Cca01g00276 01 2893081 2894695 Cca05g01616 05 35579492 35581246 PCT