Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01615 ATGGCCTCTCTCCAGCCCCAGGCCCAAGAAACCAAACCCACCGCCACCACCGCCACAGCTTCCACTCCCAACGAAACATCTAACAGTAACAGCAGTGGCAGTAACAACACCAACAAAAACTCTCGCAAGTGCAAAGGCAAAGGTGGCCCCGACAACAACAAGTTTAGATACCGCGGTGTGAGACAAAGAAGCTGGGGCAAATGGGTCGCTGAGATCCGCGAGCCACACGCCGCCCGAGCCTACGACCGCGCCGCCATCATCCTCTACGGCTCCCGTGCCCAGCTTAATCTCCAACcctccgcttcctcctctaactcttcctcctctcgttcttctaactcttcctcttccactCAAACCCTAAGACCCTTGCTCCCTCGTCCTTCTGGCttcgctttcactttctctcccaatttccccttcaACCACGCCGCCGCCATGGCATACCCTAACGCTGTCCCTCACAACCACAACGCTTATTACAATTTCACCCCTCCCGTGTTGTGCCCTAGTAATAGCAGTAATAGCAATAACATAGTtcaacatcaacatcatcatcatcatcGTATAGAGGAAGTGGTGCAAGTGCAACAAGAGTATCAACGCTCGGAATCTGATGGTAGGAATAATACTATTGATGGTTCTTCTGTTAGATCAACTTCGTACCAGAGGCATGGGATTCAGGATAGTAATAATCATGTGGGGCAAGTGCAGCATGGTGCTTTGTCAAATCAAGCACAGCTTCAAAGTAACATGCATGTTGTGGAAGGAGTGAATTCCGTTCCGGTGGATCCGGATCTGTCATTGATGGGGACGGTGGGGTTTGGATCTCCGTCTATCTGGTCGTTGGCGAATGAAGAGGATTACGCTGGGAGTTTGTGGGATTATAGTGATCCTTTCTTatttgatttttag 915 0.4393 MASLQPQAQETKPTATTATASTPNETSNSNSSGSNNTNKNSRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPHAARAYDRAAIILYGSRAQLNLQPSASSSNSSSSRSSNSSSSTQTLRPLLPRPSGFAFTFSPNFPFNHAAAMAYPNAVPHNHNAYYNFTPPVLCPSNSSNSNNIVQHQHHHHHRIEEVVQVQQEYQRSESDGRNNTIDGSSVRSTSYQRHGIQDSNNHVGQVQHGALSNQAQLQSNMHVVEGVNSVPVDPDLSLMGTVGFGSPSIWSLANEEDYAGSLWDYSDPFLFDF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01615 304 MobiDBLite consensus disorder prediction 197 223 - -
Cca05g01615 304 Gene3D AP2/ERF domain 55 98 IPR036955 GO:0003700|GO:0006355
Cca05g01615 304 CDD AP2 56 98 IPR001471 GO:0003700|GO:0006355
Cca05g01615 304 MobiDBLite consensus disorder prediction 1 58 - -
Cca05g01615 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 7 302 - -
Cca05g01615 304 SMART rav1_2 56 104 IPR001471 GO:0003700|GO:0006355
Cca05g01615 304 MobiDBLite consensus disorder prediction 1 43 - -
Cca05g01615 304 MobiDBLite consensus disorder prediction 98 123 - -
Cca05g01615 304 ProSiteProfiles AP2/ERF domain profile. 56 98 IPR001471 GO:0003700|GO:0006355
Cca05g01615 304 SUPERFAMILY DNA-binding domain 56 99 IPR016177 GO:0003677
Cca05g01615 304 MobiDBLite consensus disorder prediction 44 58 - -
Cca05g01615 304 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01615 Cca-Chr5 35564730 35566060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01615 42 304 AP2-EREBP Transcription Factor Family AT2G40220 39.344 5.42e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01615 K09286 - gmx:100301892 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01615 05 35564730 35566060 Cca05g01615 05 35564730 35566060 ECH