Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01614 ATGACGACGCGGGACTCGGAGGTTCTGAATTGGCACTACGACACGGAGCTCGACGACCAAACCATCGAACTCCGCGGCCGCAAGATCTTCTTCATCGCCGTCCTCTTCTCCATCATCCTCCTATTCACGGCGCTCTTCCTCTTCGCGCGCCGGATCTGCCGCCACAGCCACGCCCTCGCCCTCCTCCCGGACGCCGCCCTGCCGGCGGCAGCGGTGCAGCAGCGGCAGGGCCTGGACGGCGGCGCCATCAAGAGGCTCCCGATCATCCTGCACCAGGGCGCggcggcggaggagacggagacggagacggagTGCTGCATCTGCCTGGGCGCGTTCGTGGACGGCGAGAAGCTGAAGGTGCTCCCCGGGTGCGACCACAGCTTCCACTGCGAGTGCGTCGACACGTGGCTTGCCAATCACTCCAATTGCCCTCTCTGCAGAGCTTCGCTCAAACTCGATTCCTCGTTTCCTAGGATTTTGATCCAAGCGCCACCCTTTGCTGCTACTCTCCCTGCACTCTGA 522 0.5958 MTTRDSEVLNWHYDTELDDQTIELRGRKIFFIAVLFSIILLFTALFLFARRICRHSHALALLPDAALPAAAVQQRQGLDGGAIKRLPIILHQGAAAEETETETECCICLGAFVDGEKLKVLPGCDHSFHCECVDTWLANHSNCPLCRASLKLDSSFPRILIQAPPFAATLPAL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01614 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Cca05g01614 173 SMART ring_2 105 146 IPR001841 -
Cca05g01614 173 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Cca05g01614 173 Pfam Ring finger domain 104 147 IPR001841 -
Cca05g01614 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 162 IPR044675 -
Cca05g01614 173 PANTHER RING-H2 FINGER PROTEIN ATL66 3 162 - -
Cca05g01614 173 SUPERFAMILY RING/U-box 98 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01614 Cca-Chr5 35547631 35548438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01614 6 155 C3H Transcription Factor Family AT3G11110 44.371 1.89e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01614 - - gmx:100794554 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00278 01 2910008 2911703 Cca05g01614 05 35547631 35548438 PCT