Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01612 ATGATGATCGACAGCGGTGACGATCGCGTTAAGGGCTCGTGGAGTCCGCAAGAGGACGCCACGCTCTTGAAATTGGTGAACGAACACGGCGCCAGAAACTGGTCCGTCATAAGCAGCGGCATTCCAGGGCGCTCCGGCAAGTCCTGCCGTCTGCGGTGGTGCAACCAGCTCAGCCCCGAAGTGCAGCACCGTCCCTTCACGCCGGCGGAGGATAGAATCATCGTAAAGGCGCACGCCATTCACGGAAACAAGTGGGCCACCATCTCCCGCCTCCTCCCCGGCCGCACCGACAACGCCATCAAGAACCACTGGAATTCCACGCTccgccgccatcgcgccgcctccgcctcctcagattccccgcctccgccggcgAAGCGTCCCTCGGTTTTCGACACGTTTCGCCCTCTCAAGAAACTTTGCATTGAAAAAGAAACTGAGGAAGAGAGACTCGCGAGTACCGTAACGACGTCGTTGAGTCTTTTCCCGCCGGGggaaaggtcagaggaagacgaagaagaaaaggagaaggaagaagaGTTTGAGGTAAACACCATTATGAGTGATAATCAGAAGCGCTTTATACAAGTGATTCGGCGCATGATAGCAGAAGAGGTTAGGAATTATTTCCATACTTTGCGCCTTCAAGAAAGAGACAATCCTTTCCTTCAACATGATTTAGATTTTCATCCCATAGTTCCAAAATAA 708 0.452 MMIDSGDDRVKGSWSPQEDATLLKLVNEHGARNWSVISSGIPGRSGKSCRLRWCNQLSPEVQHRPFTPAEDRIIVKAHAIHGNKWATISRLLPGRTDNAIKNHWNSTLRRHRAASASSDSPPPPAKRPSVFDTFRPLKKLCIEKETEEERLASTVTTSLSLFPPGERSEEDEEEKEKEEEFEVNTIMSDNQKRFIQVIRRMIAEEVRNYFHTLRLQERDNPFLQHDLDFHPIVPK 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01612 235 Gene3D - 10 62 - -
Cca05g01612 235 CDD SANT 65 108 IPR001005 -
Cca05g01612 235 MobiDBLite consensus disorder prediction 149 178 - -
Cca05g01612 235 Pfam Myb-like DNA-binding domain 65 107 IPR001005 -
Cca05g01612 235 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Cca05g01612 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 57 IPR017930 -
Cca05g01612 235 ProSiteProfiles Myb-like domain profile. 6 57 IPR001005 -
Cca05g01612 235 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Cca05g01612 235 PANTHER OS01G0850400 PROTEIN 8 190 - -
Cca05g01612 235 MobiDBLite consensus disorder prediction 109 131 - -
Cca05g01612 235 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Cca05g01612 235 CDD SANT 13 55 IPR001005 -
Cca05g01612 235 SMART sant 10 59 IPR001005 -
Cca05g01612 235 SMART sant 62 110 IPR001005 -
Cca05g01612 235 PANTHER MYB PROTEIN-RELATED 8 190 - -
Cca05g01612 235 Gene3D - 65 111 - -
Cca05g01612 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01612 Cca-Chr5 35537287 35538439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01612 8 122 MYB Transcription Factor Family AT5G67300 65.289 6.02e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01612 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01612 - - gmx:778069 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01612 05 35537287 35538439 Cca05g01612 05 35537287 35538439 ECH