Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01611 ATGCTTTGTATTGTGCTTATGGAAAGTTACTACTATACTGGCTGGCCTCTTGCCACCAACGTGGCTCAATGCAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTGCCAACACAAATAGCTTCTGACCCTGCCACTCTTCAATTTGGTGAGTTTCCTTCTTGGCCTACACCTATTGAAGATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAGAGGCGCAGGGACAGGATCAATGCACAGCTTGCAACTCTCAGAAAACTCATTCCCAAGTCTGATAAGATGGACAAGGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGAGAAAAGCCATGGATGTGAGCAAAGCCATTACTGTTCCAACTGAAACCGATGAAGTAACAATTGATTACCACCAAGCTCAAGATGAAAGCTACAACAAAGTAAACATATTGAAGGAAAACATCATTATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAGATCATCCAAGTCCTTAAAGGCTTGAGACTCACAGCAGTTAAGGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTATTTGCTCAAAGGATAGTGAAGAGGGTAATAGTGTTTGCCTTAGCACCCTCAAACAATCCCTTAAATCAGCAGTGAACAAAATTGCTTCGTTATCTGTGGCAACAAACTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTATGTGCAATAA 777 0.4311 MLCIVLMESYYYTGWPLATNVAQCNSAPNSDQLSPFSVPTQIASDPATLQFGEFPSWPTPIEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKAITVPTETDEVTIDYHQAQDESYNKVNILKENIIIKASVCCDDRPELFPEIIQVLKGLRLTAVKADIASVGGRIKSILVICSKDSEEGNSVCLSTLKQSLKSAVNKIASLSVATNCPTRSKRQRFFLPSHYVQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01611 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Cca05g01611 258 PANTHER TRANSCRIPTION FACTOR BHLH51 40 257 - -
Cca05g01611 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 119 IPR036638 GO:0046983
Cca05g01611 258 CDD ACT_UUR-ACR-like 163 228 - -
Cca05g01611 258 CDD bHLH_AtAIG1_like 62 139 - -
Cca05g01611 258 Gene3D - 62 125 IPR036638 GO:0046983
Cca05g01611 258 SMART finulus 73 122 IPR011598 GO:0046983
Cca05g01611 258 PANTHER TRANSCRIPTION FACTOR BHLH30 40 257 IPR045847 GO:0003700|GO:0006355
Cca05g01611 258 Pfam Helix-loop-helix DNA-binding domain 70 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01611 Cca-Chr5 35517510 35519672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01611 63 256 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 48.485 3.70e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca05g01611 HLH 7.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01611 - - gmx:100306102 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01611 05 35517510 35519672 Cca05g01611 05 35517510 35519672 ECH
Cca01g00280 01 2926741 2928243 Cca05g01611 05 35517510 35519672 PCT