Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01606 ATGTGCAGTGATTCAAAGAGTAAGCTTTCTTCGCCAAACCTCGTCATGGAGAATGGTAATCTTCAGAAGCAGAATCTAGATGGTCTCTACAACTTCTCAGTTCTGCTGGAATTGTCTGCATCAGATGATTTTGAAGCTTTCAAAAGAGAAGTGGATGAGAAGGGGTTGGATGTGAACGAGGCAGGGTTTTGGTATGGTAGAAAAATTGGGTCAAAGAAGATGGGATCCGAAACAAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACTAAGGTGGTCAACTATATTCTTGAGGCAGCAAGTGTTGATGTAAACAGGGTCTGTGGTTCTGATGGGGCCACTGCTCTCCATTGTGCTGTTGCTGGGGGCTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGACGCTGGTGCTGATGCTGAATGCCTTGACGCCAGGGGCAATAAGCCGGTTGATCTGATTGCTCCCGCCTTCGATTCATCGTCCAAATCGCGAAGGAAGGCTATGGAGTTGTTCCTCAGAGGTGAGGAAAGGGATGAACTCATGAGCCAGGAGATGGAGCTGCAGATGTTCTCATCCAAAGAAGGTGCTGAGAAAAAGGAAGGAAGTGATAAGAAAGAATATCCTGTTGACATATCGTTGCCGGACATAAACAACGGTGTATACGGATCGGATGAGTTTAGGATGTACAGCTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTATAGCTGTGTTCCTTGCCCTGAGTTTCGCAAGGGAACCTGCCAGAAGGGGGATTCCTGCGAGTATGCTCATGGTGTTTTTGAGTCATGGCTCCATCCGGCCCAATACCGAACAAGGCTTTGCAAGGATGAGACTGGTTGCACTAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGCTGCGCCCGGTGTATGCTTCCACTGGGTCGGCTATGCCTTCGCCGAAATCCTATTCAGCTAGCGGACTTGACATGAGTGCTATGAGTCCATTGGCTCTTAGTTCAACATCTTTGCCTATGCCAACTGTTTCAACCCCACCCATGTCTCCCTTGGCAGCTGCTTCCTCTCCCAAGAGTGGAAACCTGTGGCAGAACAAAATAAACCTCACTCCACCATCCCTGCAGCTCCAGGGTAGCCGGTTGAAGTCAGCTTTGAATGCCAGGGATCTGGATCTGGAGATGGAACTGCTAGGTCTAGAAAGCCCGGCTCGTcaacaacagcaacaacaacaacaaTTGATAGAAGAGATTGCCAGGATCTCTTCCCCCTCTTTCCGGAGCAAGGAATTCAATAGGATTGTTGACATGAGTCCAACTAACCTTGATGACCTGTTAGCATCTGCTGACCCTTGTGTGTTATCTCAACTACATGGACTTTCGGTGCAACCTTCAACACCTACACAGTTGCAACAATCTCCAAGCAGCCTTCAAATGCGCCAAAACATGAACCACCTTCGCGCCAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGAAGCCTGCAGGATATGGGTTTGACTCATCGGCTGCTGTGGCCGCTGCGGTGATGAATTCCAGGTCGGCTGCTTTTGCAAAGCGAAGCCAAAGTTTCATCGACCGTGGAGCTGCAACCCACCATTTTGGGCTGTCTTCACCTTCCAACCCTTCCTGTAGGGTGTCCTCTGCCCTTTCAGATTGGAGTTCCCCCACCGGGAAACTCGATTGGGGTGTAAACGGAGACGAGCTGAACAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAATGGGGTGACTGCATCCCCCATAGCACAGCCAGAACATGTTGAGCCTGATGTCTCATGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAGTTCTGAGATATTTGGTAAAGAGATGCTTTCACCATGGGGGGAGCAGCTGTACATAGAGCAGGAGCAGATGGTAGCATGA 2025 0.4864 MCSDSKSKLSSPNLVMENGNLQKQNLDGLYNFSVLLELSASDDFEAFKREVDEKGLDVNEAGFWYGRKIGSKKMGSETRTPLMIASLFGSTKVVNYILEAASVDVNRVCGSDGATALHCAVAGGSESSLEIVKLLLDAGADAECLDARGNKPVDLIAPAFDSSSKSRRKAMELFLRGEERDELMSQEMELQMFSSKEGAEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMSAMSPLALSSTSLPMPTVSTPPMSPLAAASSPKSGNLWQNKINLTPPSLQLQGSRLKSALNARDLDLEMELLGLESPARQQQQQQQQLIEEIARISSPSFRSKEFNRIVDMSPTNLDDLLASADPCVLSQLHGLSVQPSTPTQLQQSPSSLQMRQNMNHLRASYPSNIPSSPVRKPAGYGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHFGLSSPSNPSCRVSSALSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPIAQPEHVEPDVSWVHSLVKDVPSESSEIFGKEMLSPWGEQLYIEQEQMVA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01606 674 SMART ANK_2a 112 144 IPR002110 GO:0005515
Cca05g01606 674 SMART ANK_2a 77 107 IPR002110 GO:0005515
Cca05g01606 674 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Cca05g01606 674 Gene3D - 116 180 IPR036770 -
Cca05g01606 674 PANTHER UNKEMPT FAMILY MEMBER 18 673 IPR045234 -
Cca05g01606 674 Pfam Ankyrin repeats (3 copies) 75 143 IPR002110 GO:0005515
Cca05g01606 674 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
Cca05g01606 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 673 - -
Cca05g01606 674 Gene3D - 270 331 - -
Cca05g01606 674 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Cca05g01606 674 Gene3D - 30 115 IPR036770 -
Cca05g01606 674 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Cca05g01606 674 SUPERFAMILY Ankyrin repeat 25 166 IPR036770 -
Cca05g01606 674 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Cca05g01606 674 SMART c3hfinal6 268 294 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01606 Cca-Chr5 35424947 35428146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01606 30 669 C2H2 Transcription Factor Family AT5G12850 39.069 1.52e-145 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca05g01606 Ank_2 2.5e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01606 05 35424947 35428146 Cca05g01606 05 35424947 35428146 ECH