Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01600 ATGAAGAATAATAAATCACCTTTCTCCGtcactctcttcgccctcttcctcctctcttcgctgcccctatcccgcgccctcGGTTccgccgccaccctcgccgtcaccgccgcccccgccgccgTCTGTGGCGTGGTGGCGTCCGAGCCGACGCGGCGCATTGCGTGCTATCTCTCCGGCCGCGTCGTCGCCGTCGCCCCCAATGTCTCGTTCTCGGCGATCTCCGGCGGCCGGAGCTACTTCTGCGGCCTCCGGTCCGGAAACTACAGCCTCCTCTGCTGGGACGCCCTTGCTGGCTTCCAAAGCAAGAGGCTTTACAACAATGACACTGTTCTATTCGAGAATCTCGCCGTCGGAGACTCCCAGGTTTGCGCCACCGTGGTCGGCGCCGGCACGGCGTCGTGTTGGAGGACGAACGCCGCGTTCGAATTGCCTTCTGGGTCGGACCGATTTTCCTCTATTTCATCTGGGTCGGGCTTTTCCTGCGGAATTTTGAAGGGTAGTGATCGGGTTCGGTGTTGGGGGGTTGGGTCTGTGGCGAGGAAAATGGAGGGTGAGTTTGGGAACGTGTCTATGGTGAGTCTTGTAGCTGGGGAATCGCATGTTTGTGGGTTGAATTCAAGTGGGTATTTGGTTTGCAGAGGAAGTAACGATTTTGGTCAAATTGATGTTCCTGAAGGAGGGGCTTTGGAGTTTTCTGGTTTGGCTCTTGGAGCGGAGCATAGTTGTGCTATTCGGAGATCCAATGGTTCTGTGATTTGTTGGGGTGGGAGAGGTTTGTTTTCGGTCAATGTTACGGAAGGTGTTTCTTTTGAGGTTATTGTTTCTGGTTTTAATTTTACTTGTGGATTGACAACTAACAATTTTTCAGTCATTTGTTGGGGTCCTGGTTGGGCTAATGGTTCAGCTTTTGAGGTTCCCTTGCCTCCTATTCTTCCAGGGCCTTGTGTTCAATCCTCTTGTAGTGAGTGTGGGATATACCCTCAATCTGAGACTCTGtgttctggctttggtaacatttggaagaagaaaattcacaattctgtgcagccaagaatcactagaggTGGTAGTATAAATGGTGGTGGTGGTTCTAATAATAGCAATAGTCCTCCTTCGAGATCATCCACCATTAGGCGTCAAGGGTCGCGGATAATGAGGCGCCAACGGAGTGGAACCTCGTCCACAAAGCATGCTGATAGAGCTGAGGAGTTCACCCTGGCTGAGCTTGTTGCAGCCACTGATAATTTCTCCCTTGAAAACAAGATTGGTGCTGGAAGCTATGGTGTTGTTTATAGAGGCAAACTCGTGGATGGTCGCGAGGTGGCGATCAAAAGGGGTGAAACCGGCACCAAGATGAAGAAGTTTCAAGAGAAAGAGAGTGCATTTGAGTCAGAATTGGCCTTCTTGTCCAGGCTACATCACAAGCACTTGGTCAGGCTGGTGGGGTTCTGTGAGGAGAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGTGCCTTGTATGATCATTTGCATGACAAGAAGAATGTGGACAAGAGTAGCAGTGTCTTGAACTCATGGAGAATGAGGATCAAAATTGCGCTGGATGCTTCGCGAGGAATTGAGTATCTCCACAACTATGCAGTTCCATCCATAATTCACAGAGATATCAAATCTTCCAACATTCTAATTGACGCGACATGGACGGCAAGAGTGTCCGATTTTGGATTGTCAATGATGAGTCCAGAATCTGACCATGATTACCGGCCAGTGAAGGCAGCAGGAACAGTTGGATACATTGATCCTGAATATTATGGCCTAAATGTGTTGACAGCAAAGAGTGATGTCTATGGACTTGGAGTAGTACTACTAGAATTGTTAACAGGAAAGAGGGCTATATTCAAGGGTGATGAAAGTGGAGGCACACCAGTAAGTGTGGTAGACTTTGCAGTGCCAGTGATCATGGCAGGAGAATTGGCAAAGATTTTGGATCCAAGGGTTGCAGCACCAGAGTTGAATGAAACAGAAGCAGTGGAGCTAGTGGCATATACTGCCATGCATTGTGTGAATTTGGAAGGTAAGGACAGACCAACGATGGCTGATATAGTGGCAAATTTGGAGCGTGCTTTGGCTCTTTGTGATAGCAGTCATGGCAGCATTTCCAGTGGTACAATTTCCATTGTATCTGACTGA 2181 0.4493 MKNNKSPFSVTLFALFLLSSLPLSRALGSAATLAVTAAPAAVCGVVASEPTRRIACYLSGRVVAVAPNVSFSAISGGRSYFCGLRSGNYSLLCWDALAGFQSKRLYNNDTVLFENLAVGDSQVCATVVGAGTASCWRTNAAFELPSGSDRFSSISSGSGFSCGILKGSDRVRCWGVGSVARKMEGEFGNVSMVSLVAGESHVCGLNSSGYLVCRGSNDFGQIDVPEGGALEFSGLALGAEHSCAIRRSNGSVICWGGRGLFSVNVTEGVSFEVIVSGFNFTCGLTTNNFSVICWGPGWANGSAFEVPLPPILPGPCVQSSCSECGIYPQSETLCSGFGNIWKKKIHNSVQPRITRGGSINGGGGSNNSNSPPSRSSTIRRQGSRIMRRQRSGTSSTKHADRAEEFTLAELVAATDNFSLENKIGAGSYGVVYRGKLVDGREVAIKRGETGTKMKKFQEKESAFESELAFLSRLHHKHLVRLVGFCEEKDERLLVYEYMKNGALYDHLHDKKNVDKSSSVLNSWRMRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILIDATWTARVSDFGLSMMSPESDHDYRPVKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKGDESGGTPVSVVDFAVPVIMAGELAKILDPRVAAPELNETEAVELVAYTAMHCVNLEGKDRPTMADIVANLERALALCDSSHGSISSGTISIVSD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01600 726 Gene3D Phosphorylase Kinase; domain 1 378 497 - -
Cca05g01600 726 MobiDBLite consensus disorder prediction 352 399 - -
Cca05g01600 726 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Cca05g01600 726 ProSiteProfiles Protein kinase domain profile. 417 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01600 726 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 12 342 IPR044815 GO:0004674
Cca05g01600 726 Pfam Regulator of chromosome condensation (RCC1) repeat 193 221 - -
Cca05g01600 726 SUPERFAMILY Protein kinase-like (PK-like) 396 702 IPR011009 -
Cca05g01600 726 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 340 724 IPR044815 GO:0004674
Cca05g01600 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Cca05g01600 726 SMART serkin_6 417 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01600 726 SUPERFAMILY RCC1/BLIP-II 63 296 IPR009091 -
Cca05g01600 726 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 12 342 - -
Cca05g01600 726 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 340 724 - -
Cca05g01600 726 Pfam Protein kinase domain 418 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01600 726 MobiDBLite consensus disorder prediction 352 380 - -
Cca05g01600 726 Gene3D Transferase(Phosphotransferase) domain 1 498 715 - -
Cca05g01600 726 Gene3D - 117 326 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01600 Cca-Chr5 35297315 35299696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01600 333 726 Receptor kinase-like Gene Family AT3G55950 72.749 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Cca05g01600 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01600 - - gmx:100798905 1127.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01600 05 35297315 35299696 Cca05g01600 05 35297315 35299696 ECH
Cca01g00289 01 3070265 3071435 Cca05g01600 05 35297315 35299696 PCT