Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01593 ATGGGGAGGTTGTTTGTGGTCCATCTGGAGGGGAAGGTCTATAGCTGCAAACACTGCCGAACCCATCTCGCTCTCTACGAAGACATCGTTTCCAAGTCTTTCCACAGCAGACATGGTAAAGCTTATCTCTTCAGTAAGGTTGTGAATGTTTCTGCGGGAGTAAACGAGGACAGGCAGATGCTCACTGGAATGCATACTGTGGCCGACATTTTCTGTGTGGGCTGTGGATCAATTGTGGGTTGGAAATATGAGACTGCTCATGAAAAAGGCCAGAAATACAAGGAAGGAAAATCTGTACTTGAACGGTACAAGGTATCAGGTCCTGATGGCAACAATTATTGGGTCAGCCATGAAGCACATGTTGGTGGAAGTGATGCCGATGATGCTTAG 390 0.4692 MGRLFVVHLEGKVYSCKHCRTHLALYEDIVSKSFHSRHGKAYLFSKVVNVSAGVNEDRQMLTGMHTVADIFCVGCGSIVGWKYETAHEKGQKYKEGKSVLERYKVSGPDGNNYWVSHEAHVGGSDADDA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01593 129 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Cca05g01593 129 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 13 106 IPR004910 -
Cca05g01593 129 PANTHER PROTEIN YIPPEE-LIKE 1 129 - -
Cca05g01593 129 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 129 IPR039058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01593 Cca-Chr5 35193655 35196693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01593 - - gmx:100780394 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01593 05 35193655 35196693 Cca05g01593 05 35193655 35196693 ECH
Cca01g00308 01 3353847 3360651 Cca05g01593 05 35193655 35196693 PCT