Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01590 ATGGCCCTAACTCTAACTCTAATCATGTTTCTTCTCATTGTTGTTTCACAAACCATGGTGTACATGATCCCATGTACACTTGGTCTTGCTTTGATGAATTCAGAGAGTGATAAGCTGGCTTTACTTGCTTTGAAGCAAAAGCTTACCAATGGCATGCCTGATGCTCTTCCAtcatggaaccagtctttgcatttctgtgagtggcagggtgttacatgctgtcaacgccacgtgagagtttctgtcttgcacttggaaaatcaaaactggggtggtactcttggaccatccttgtcaaatctaaccttcctcagaatgcttattctttccaacatcgacttgcatggtgaaattcccactcaagttggtcgactaaagagattgcaggttcttgacttgAGCCACAACAATCTCCATGGTGAGATTCCCATTAATCTTAATAACTGCTCTAATCTTGAGGTAATTAACTTGTTGTACAATAAACTCACTGGAAAAGTTCCATCATGGTTTGGAATTGGATCTATGGCACGGCTTACTAAGTTGCTTCTTGGTGCTAATGATCTAGTTGGAACTATTCCACCTACCTTGGGGAATCTTTCATCCCTCCAAAATATCACACTTGCAAGAAATCATTTAGAAGGAAGTATACCTCATGTTTTGGGTCGGTTATCAAATTTGAAAGAGTTGAATCTTGGTTTAAATAGTTTGTCAGGAGTAGTCCCTGATTCTCTCTACAACCTTTCGAATATTCAAATTTTTGTTTTAGGGAAAAACCAGTTAGGTGGTACTCTTCCATCAAATATGCAACTTGCTTTTCCAAATCTTCGAGTATTCTTGGTTGGATGGAACAACTTCAATGGAACTTTCCCATATTCAATATCCAACATCAGCGGATTACAAGTGTTTGATATATCCTCAAATGGTTTTAATGGGCCAATTCCACCCACTTTGGGAAGCTTAAATAAACTCAAGAGGTTTAACATTGCATATAATAGTTTTGGAGGTGGGAGAGCTCAGGATTTGGACTTCCTTTCCTCATTAACCAATTGCACTGAATTGCACATACTTATTTTGGAGAGCAATGAATTTGGTGGCGTGTTGCCAGATCTTATTGGCAATTTTTCTATCCATCTCACTTGGCTTAGTATGGGGATAAATCAAATATCTGGAATGATACCTGAAGGAATTGGACAGCTAATCAGTTTAACTAACTTCATTATGATAGATAATTACCTAGAAGGAACTATTCCAGATTCAATTGGGAAGCTTAAAAATCTAGTAAGACTTGCCCTGCAAGGAAACAAATTCTCTGGTAATATTCCTATAGCCATTGGCAATCTTACTATGTTGTCTGAACTTTATCTGCACACCAATGAACTTGAAGGAAGGATTCCATTAAGCCTCAAATACTGCACCCGCATGCAGTCATTTGGTGTTTCTGACAACAACTTGAGTGGTGATATCCCTAATCGAACATTTGGCAATCAAGAAGGTTTGATAAatcttgacttatccaacaactctttcactggctccattcctttggagtttggaaacttgaagcacctatccatattatatctattcgaaaacaagttatcaggtgaaattcccccacaacttagtgcatgttctgcattaacagagctcgtgctggagaaaaacttcttcagtggaagcatatcctcattcttgggctctttaatatccctcgaaatcctagacctttctaacaacaacttctcaagcacaatccctggggaactacaaaatctgacttatttgaatacattgaacctgtcttttaaccatctttacggtgaggttcctataggaggtgtctttagtaatgtcaaaaatttctcactcgttggaaataaggatctctgtggagggataccacaactgaagctcccaacatgttctaggttgctctcaataaaacacaagtggtctcttagaaagaaacttatcctcatcattgtaattggagttggagggggtttggtcattttcataatatttatcagcatctgtttgttcaggaaaaagccccaaacattatcttcatcacagtctcggcaaaatatgtacataaaggtttcttatggagagctgcatgaagcaaccaatggattttgttcatccaatttagtaggcgctggaagctttggttctgtatacaaaggatatcttctccattttgaaagacctgttgcggtaaaggtgttgaatcttgaaacttgtggagcatcaaagagtttcacagctgaatgcaaggctctgggaaagatcagacatcaaaatgttgtcaacatcctgacttattgtacaggtattgatcataatggggatgatttcaaggctatagttttagaattcatgcctgaggggagcctagaaagtttgctgcacagcgacgaagagcttgagtctagaaacttcaatctcaaccttcaacagaggataaatattgctcttgatgttgctaatgcattggattatcttcatcgtggttctgagcaagctgttgttcactgtgatattaagccaagcaatgttcttcttgatgatgacattgttgcccacttgggagattttgggttagcaaggcttcttaatgtagtcacgggacattccagcagagatcagactagttcgtatgcaattagaggaaccattggatatgttcccccagagtatggagcgggtgtgcatgtatcagcaaaaggagatatctacagctacggaattcttgtgttggagatgctgaccggaaagaaaccaacggataacatgtttggtgagggtctAAGCCTACACAAATTCTGTGAGAATGCAATTCCAGATAGAATTATAGAGATAGTAGATTCACGTTTGCTTGTGTCCAGTGCTGAAGAGGGAACAAGGGTCATGGAAAGAACCATTGGGGAGTGTTTGGTGTCCTTTGCTAGGATTGGAGTTGCATGTGCCGCAGAATTGCCCAATCAGCGAATGGACATAAAAGATGTGATAGTGGAGTTGCAAGCAATCAAACGGAAGCTACCTTAA 3051 0.1914 MALTLTLIMFLLIVVSQTMVYMIPCTLGLALMNSESDKLALLALKQKLTNGMPDALPSWNQSLHFCEWQGVTCCQRHVRVSVLHLENQNWGGTLGPSLSNLTFLRMLILSNIDLHGEIPTQVGRLKRLQVLDLSHNNLHGEIPINLNNCSNLEVINLLYNKLTGKVPSWFGIGSMARLTKLLLGANDLVGTIPPTLGNLSSLQNITLARNHLEGSIPHVLGRLSNLKELNLGLNSLSGVVPDSLYNLSNIQIFVLGKNQLGGTLPSNMQLAFPNLRVFLVGWNNFNGTFPYSISNISGLQVFDISSNGFNGPIPPTLGSLNKLKRFNIAYNSFGGGRAQDLDFLSSLTNCTELHILILESNEFGGVLPDLIGNFSIHLTWLSMGINQISGMIPEGIGQLISLTNFIMIDNYLEGTIPDSIGKLKNLVRLALQGNKFSGNIPIAIGNLTMLSELYLHTNELEGRIPLSLKYCTRMQSFGVSDNNLSGDIPNRTFGNQEGLINLDLSNNSFTGSIPLEFGNLKHLSILYLFENKLSGEIPPQLSACSALTELVLEKNFFSGSISSFLGSLISLEILDLSNNNFSSTIPGELQNLTYLNTLNLSFNHLYGEVPIGGVFSNVKNFSLVGNKDLCGGIPQLKLPTCSRLLSIKHKWSLRKKLILIIVIGVGGGLVIFIIFISICLFRKKPQTLSSSQSRQNMYIKVSYGELHEATNGFCSSNLVGAGSFGSVYKGYLLHFERPVAVKVLNLETCGASKSFTAECKALGKIRHQNVVNILTYCTGIDHNGDDFKAIVLEFMPEGSLESLLHSDEELESRNFNLNLQQRINIALDVANALDYLHRGSEQAVVHCDIKPSNVLLDDDIVAHLGDFGLARLLNVVTGHSSRDQTSSYAIRGTIGYVPPEYGAGVHVSAKGDIYSYGILVLEMLTGKKPTDNMFGEGLSLHKFCENAIPDRIIEIVDSRLLVSSAEEGTRVMERTIGECLVSFARIGVACAAELPNQRMDIKDVIVELQAIKRKLP 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01590 1016 ProSiteProfiles Leucine-rich repeat profile. 127 150 IPR001611 GO:0005515
Cca05g01590 1016 SMART serkin_6 713 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01590 1016 Gene3D Ribonuclease Inhibitor 342 646 IPR032675 -
Cca05g01590 1016 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 22 1016 - -
Cca05g01590 1016 SUPERFAMILY L domain-like 61 372 - -
Cca05g01590 1016 SMART LRR_typ_2 175 199 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 520 544 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 125 149 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 568 591 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 223 246 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 592 617 IPR003591 -
Cca05g01590 1016 SMART LRR_typ_2 423 447 IPR003591 -
Cca05g01590 1016 PANTHER LRR RECEPTOR-LIKE KINASE 22 1016 - -
Cca05g01590 1016 SUPERFAMILY L domain-like 377 631 - -
Cca05g01590 1016 Gene3D Ribonuclease Inhibitor 33 173 IPR032675 -
Cca05g01590 1016 SUPERFAMILY Protein kinase-like (PK-like) 687 1008 IPR011009 -
Cca05g01590 1016 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Cca05g01590 1016 Gene3D Transferase(Phosphotransferase) domain 1 795 1015 - -
Cca05g01590 1016 ProSiteProfiles Leucine-rich repeat profile. 570 593 IPR001611 GO:0005515
Cca05g01590 1016 Gene3D Ribonuclease Inhibitor 174 341 IPR032675 -
Cca05g01590 1016 Gene3D Phosphorylase Kinase; domain 1 677 794 - -
Cca05g01590 1016 ProSiteProfiles Protein kinase domain profile. 713 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01590 1016 Pfam Protein kinase domain 717 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g01590 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Cca05g01590 1016 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Cca05g01590 1016 Pfam Leucine rich repeat 546 605 IPR001611 GO:0005515
Cca05g01590 1016 ProSitePatterns Protein kinases ATP-binding region signature. 719 742 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01590 Cca-Chr5 35149285 35153129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01590 35 1015 Receptor kinase-like Gene Family AT3G47570 43.175 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Cca05g01590 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01590 - - gmx:100776429 1569.29