Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01584 ATGGCTTCCTCTTACCGTGACCGCACGTCGGAGTTCCGGTTACTGTCGGAGACTCTGAAGAAGATCGGAGGAGGCGCGGCGCCTCCGCCTCAATCCGAGAATGCTCCTTCGACCTCTCACGAGTCCTATTCGAGATCCGAATTCAACCGAAAGGCCTCGCGAATCGGGTTGGGGATCCACGAGACGTCGCAGAAGATCGCGAGGCTCGCGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCGGCCGTGGAGATTCAGGAACTGACGGCGTTGATTAAGAACGAAATCACGGCGATGAACTCCGCTCTCTCCGATTTGCAAACCATTCAGAACATGGACATGGCCGACGGCGGTTACTCGCAGGACAGGATTGTGCATTCCACCGCGGTTTGCGATGACTTGAAGAGCAAACTCATGGGAGCCACGAAGCACCTTCAAGATGTGTTAACTGCTAGGACTGAGAATATCAAGGCTCATGAGAACAGGAAGCAGATATTTTCCAAGAATGTATTAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCAGCCACTGAGCCGCCACCTTGGTCAAATTCATCAAATGCATCTGAGAATTTGCAACAAGAATCAGTATTACCATCAAATGGAGCTCCTGTTGGCAATCAACTAAGACGGAGGTTGGCTGTGGACAACACTCCATCTCAACAAATGGAAATGTCTATGATACAGCAGGTTGTTCCTCGGCATGAGAACTATGCTCAAAGTCGGGCAACTGCTCTGCACAATGTGGAATCTACTATCACAGAACTTAGTGGGATTTTTTCGCATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGCATCTCAACCAAATTTCATCAAATAGGTGGCTTCTAATAAAGATATTTGCCATTCTGATACTTTTCCTCATGATCTTCATATTCTTTGTCGCCTAA 1011 0.4817 MASSYRDRTSEFRLLSETLKKIGGGAAPPPQSENAPSTSHESYSRSEFNRKASRIGLGIHETSQKIARLAQLARKSSMFNDPAVEIQELTALIKNEITAMNSALSDLQTIQNMDMADGGYSQDRIVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHENRKQIFSKNVLRENPFQHQPKPATEPPPWSNSSNASENLQQESVLPSNGAPVGNQLRRRLAVDNTPSQQMEMSMIQQVVPRHENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLMIFIFFVA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01584 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cca05g01584 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Cca05g01584 336 MobiDBLite consensus disorder prediction 189 211 - -
Cca05g01584 336 MobiDBLite consensus disorder prediction 160 213 - -
Cca05g01584 336 Gene3D - 41 299 - -
Cca05g01584 336 CDD SNARE_syntaxin5 247 332 - -
Cca05g01584 336 PANTHER SYNTAXIN-31 4 335 - -
Cca05g01584 336 SMART tSNARE_6 239 306 IPR000727 -
Cca05g01584 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Cca05g01584 336 SUPERFAMILY t-snare proteins 44 299 IPR010989 GO:0016020|GO:0016192
Cca05g01584 336 Pfam SNARE domain 281 332 IPR000727 -
Cca05g01584 336 MobiDBLite consensus disorder prediction 19 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01584 Cca-Chr5 35078303 35082695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01584 1 336 SNARE and Associated Proteins AT5G05760 67.160 4.92e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01584 K08490 - gmx:100777383 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01584 05 35078303 35082695 Cca05g01584 05 35078303 35082695 ECH