Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01583 ATGGCTGGGAAATTGTCAAAGGCTGCTTACGATGCAAAGATGTTGAAGCTTCTGAGAGAGTACAGTCAAGTGTTGGTGGTTTCATCAGACAATGTGGGTTCCAACCAGCTTCAGGGCATACGGAGGGGGCTCCATGCTGATTCGGTGGTGGTGATGGGAAAGAACTCAATGATGAAACGCTCTATCATCTTGGATGCTGAGAAGACTGGCAACAAGGCTTTCCTTAATCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACTTGAGGGAGGTTAGCGAACAGATTGCCAAGTTCAAGGTCGTTCAACCTATTCTCATGTGCCCCAAGTACACTTCATATGACACGTACCAGAATTGTTCCTATATGCAATCTGGACAGTTACCTTTGGGCCTCACGTGTTGCAACCAGCAGGCTTCGCAGGCTTCAGAGCCTTTTCTTGTATGCTCAAAATTCATTCCACACCAACATTGCTTCTTGATGAGATCAAGACAGTTCTTGATGACGAGTATATGGTCTCCTCTTCTCCTTTTGGCTGGTAACTTGTGA 564 0.4592 MAGKLSKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSMMKRSIILDAEKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQIAKFKVVQPILMCPKYTSYDTYQNCSYMQSGQLPLGLTCCNQQASQASEPFLVCSKFIPHQHCFLMRSRQFLMTSIWSPLLLLAGNL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01583 187 Gene3D - 4 132 IPR043141 -
Cca05g01583 187 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 186 - -
Cca05g01583 187 SUPERFAMILY Ribosomal protein L10-like 7 106 IPR043141 -
Cca05g01583 187 Pfam Ribosomal protein L10 6 104 IPR001790 -
Cca05g01583 187 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01583 Cca-Chr5 35075065 35078301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01583 1 134 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 54.730 6.94e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01583 K02941 - mnt:21409050 160.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01583 05 35075065 35078301 Cca05g01583 05 35075065 35078301 ECH