Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01582 ATGGCCCCCAAACCTACCAAGGCAGAGAAGAAGATCGCCTATGATTCCAAGCTGTGCGACCTTCTCGAAGAGTATGGCCAGATCCTCGTCGTCAACGCCGACAACGTTGGATCCAATCAGCTCCAGAACATTCGCAAGGGTTTACGCGGCGACTCCGTGGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCTGTCAGGATTCACGCTGAGAAAACCGGCAACAATGCCTTCCTCAACCTTATCCCTCTTCTTGTTGGCAATGTGGGATTGATTTTCACTAAAGGTGATTTGAAGGAGGTCAGCGAGGAAGTTGCTAAGTACAAGGTGGGAGCTCCTGCTCGTGTTGGTTTGGTTGCCCCAATTGATGTCGTCGTTCCTCCTGGCAACACAGGGCTCGATCCCTCTCAGACCTCTTTCTTCCAGGTTTTAAATATTCCAACAAAGATTAACAAGGGTACTGTGGAAATCATTACCCCTGTTGAGCTTATTAAGAAGGGAGATAAGGTTGGCTCGTCTGAAGCTGCCTTGCTTGCCAAGCTtggcattaggcccttctcatatgggcttgtagtgctttcggtgtatgacaatggttctgtcttcagccctgaggttcttgacctgactgaggatgacctcattgagaagtttgccGTTGGTGTCTCAATGGTTACTTCTCTTTCGTTGGCTATTTCATTCCCAACACTCGCAGCGGCTCCACATATGTTTGTGAATGCCTACAAGAACGTTCTTGCTGTTGCCGTGGAGACTGATTATTCTTTCCCAGAGGCAGACAAGGTCAAGGAGTACCTCAAGGACCCAAGTAAATTTgctgtggctgctgttgttgcacctgctgctgattctggtgctggctcagctcctgctgctgctaaggaggAGGCAAAGAAAGATGAGCCAGAGGAGGAATCTGATGATGACATGGGTTTCGGTCTGTTCGATTAG 969 0.3932 MAPKPTKAEKKIAYDSKLCDLLEEYGQILVVNADNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAFLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIEKFAVGVSMVTSLSLAISFPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVVAPAADSGAGSAPAAAKEEAKKDEPEEESDDDMGFGLFD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01582 322 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Cca05g01582 322 Gene3D - 114 185 IPR043164 -
Cca05g01582 322 Pfam Ribosomal protein L10 7 108 IPR001790 -
Cca05g01582 322 Gene3D - 6 209 IPR043141 -
Cca05g01582 322 MobiDBLite consensus disorder prediction 307 322 - -
Cca05g01582 322 MobiDBLite consensus disorder prediction 288 322 - -
Cca05g01582 322 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 322 - -
Cca05g01582 322 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 322 - -
Cca05g01582 322 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
Cca05g01582 322 Pfam 60s Acidic ribosomal protein 235 321 - -
Cca05g01582 322 CDD Ribosomal_P0_L10e 9 185 - -
Cca05g01582 322 PIRSF L10E 1 322 IPR030670 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01582 Cca-Chr5 35069867 35072408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01582 1 321 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 83.178 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01582 K02941 - gmx:100777482 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01582 05 35069867 35072408 Cca05g01582 05 35069867 35072408 ECH