Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01573 ATGCCTTCTCTTGCACCCACTTTGCTCTCAAAATGCACCGTCTTCCCGGACCAAACCTCCACTCTCGGAAACCTAAAACTCTCCGTTTCGGACCTTCCCATGTTGTCCTGTCACTACATCCAAAAGGGTTGTCTCTTCACCCAACCCAATCTTCCACTCCACGCTCTCATTTCTCAGCTTAAAACCGCACTCTCTCGCACACTCTCCCTCTTTCCTCCTCTCGCCGGAAGGTTAGTAACAGACTCCCACGGCTACGTCTACATCGCCTGCAACGACGCCGGCGTCGATTTCATCCACGCCAATGCCACCGCCCTCCGCATCTGCGACCTTCTCTCCCCTCTCGACGTCCACGAATCCTTCAAGGAATTCTTCGCCTTCGACCGGAAAGTCAGCTACACCGGCCACTCCTCGCCGATTCTCGCAGTACAAATCACGGAGCTCGCCGACGGGATATTCATCGGCTGCGCCGTCAACCACGCCGTCACCGACGGCACCTCCTTCTGGAATTTCTTCAACACCTTCGCTCACCTCTGCCGAGGAGCCACCAACTCCCCCCGCAACGTCCCGGACTTCCGCCGCGACTCCATTCTAATCTCGGACGCCGTCCTCCGCCTCCCCCCCGGCGGTCCTCAGGTGACGTTCGATGCGGCGGCGCCGCTGCGCGAGCGAATCTTCAGCTTCAGCCGCGAGGCAATTCAGACGCTCAAAGCCAAAGCCAACAACTGGCGGTTAGCGGAAAATGAGAACAACGCGGGAGAGTTGATGAAGAAGCAGAGCAACGATGAGCACGCGAAGGGCAACAGAATACTGGAGAACTGGTTCAAGGTTAAACCGCTAAGCGTGACGGAAACGACGGAGATTTCGTCGTTTCAGTCGGTGTGCGCGTTGCTGTGGCGCGCGGTGACAAGAGCGAGAAAATTGGCATCGTCGAAAACGACGACGTTTAGAATGGCGGTGAATTGCCGTCACAGGATTGAACCTAAACTAGAAAGGTACTACTTCGGGAACGCGATTCAGAGCGTGCCTACTTACGCTTCCGCGGGGGACGTTTTATCAAGGGATCTAGGGTGGTGCGCGGAGCAGCTGAACAAAAGCGTGAAGGCGCACGACGAGGCTATGGTGCGGCGCTTCGTAGAGGATTGGGAAGGGAACCCGAGGTGCTTCCCTTTAGGTAACCCTGACGGTGCCTCCATCACCATGGGTAGCTCCCCCAGGTTCCCAATGTACGATAACAACTTCGGCTGGGGGAGGCCTCTCGCCGTCCGAAGTGGTCAAGCCAACAAATTCGACGGTAAGATCTCCGCTTTTCCCGGGAGAGATGGATCAGGGACCGTTGATTTGGAGGTTCTTCTATCGCCCCAAACCATGGAGGCCCTTCACTCTGATTCCGAGTTCATCAAATACGCAACGTCTCACTTATGA 1422 0.5626 MPSLAPTLLSKCTVFPDQTSTLGNLKLSVSDLPMLSCHYIQKGCLFTQPNLPLHALISQLKTALSRTLSLFPPLAGRLVTDSHGYVYIACNDAGVDFIHANATALRICDLLSPLDVHESFKEFFAFDRKVSYTGHSSPILAVQITELADGIFIGCAVNHAVTDGTSFWNFFNTFAHLCRGATNSPRNVPDFRRDSILISDAVLRLPPGGPQVTFDAAAPLRERIFSFSREAIQTLKAKANNWRLAENENNAGELMKKQSNDEHAKGNRILENWFKVKPLSVTETTEISSFQSVCALLWRAVTRARKLASSKTTTFRMAVNCRHRIEPKLERYYFGNAIQSVPTYASAGDVLSRDLGWCAEQLNKSVKAHDEAMVRRFVEDWEGNPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGQANKFDGKISAFPGRDGSGTVDLEVLLSPQTMEALHSDSEFIKYATSHL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01573 473 Gene3D - 219 465 IPR023213 -
Cca05g01573 473 SUPERFAMILY CoA-dependent acyltransferases 35 185 - -
Cca05g01573 473 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 468 - -
Cca05g01573 473 Pfam Transferase family 7 465 - -
Cca05g01573 473 Gene3D - 7 203 IPR023213 -
Cca05g01573 473 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 6 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01573 Cca-Chr5 34972824 34974783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01573 60 457 Monolignol Biosynthesis Gene Families AT5G48930 26.044 4.15e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01573 - - gmx:100779616 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01573 05 34972824 34974783 Cca01g01835 01 42827474 42830034 ECH
Cca05g01573 05 34972824 34974783 Cca05g01573 05 34972824 34974783 ECH
Cca01g00319 01 3548253 3550067 Cca05g01573 05 34972824 34974783 PCT