Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01567 ATGGAAATGGAAACCCTCTACTCCCCTTGTATTATGCCAAATTCAAATTGGTTTGTGCAAGAGGGCTACAGCACAGAGTGGACTAGAGAAGATAACAAAAAGTTTGAAAGTGCCCTTGCTATATTTGACAAGGACACACCAGATAGGTGGTTCAAGGTGGCAGCCATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCACTTCCTGGCTATCTTGCCTCCTCTTTCACCTTTGAGCTGGTTGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGCTCCTGTCAGAGGTTCTGATCACGAGAGAAAGAAAGGGGTACCCTGGACTGAAGAGGAACACAGACGGTTTCTGATGGGACTTCTAAAGTATGGTAAAGGAGACTGGAGAAACATCTCTCGCAATTTTGTGGTCACAAAGACTCCTACACAAGTTGCTAGTCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGGCCTAGCATCCATGATATAACCACTGTTAATCTCACAGAAACCGCTGAATCAGATAAGAACAAGGCTCAGTTATTTAATGTGTCTCCCATGATTGCACCACAGCAGAGGCTGAATAGCATGTCAAAAGTACAGTTGGACTGGTCTAGCCACTACAGTGATGGATCACTAATGGTTTTCAACCCCAATAGTGATGATGACTTGTTTCTGTCATCTTCATCTGATATCACTTCCAAAACCCTGAAAATGCAAGGACAGGATCTATATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGTTCCAAGTTTCAGCATGGCTCCTAGAGACTTCAACAACGAAGCTGTTTTTGGTATTCATGCACTGTAA 921 0.4354 MEMETLYSPCIMPNSNWFVQEGYSTEWTREDNKKFESALAIFDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPLPGYLASSFTFELVDNHNYDGCRRRPAPVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAESDKNKAQLFNVSPMIAPQQRLNSMSKVQLDWSSHYSDGSLMVFNPNSDDDLFLSSSSDITSKTLKMQGQDLYDCALHEAYAKVKVPSFSMAPRDFNNEAVFGIHAL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01567 306 Gene3D - 125 176 - -
Cca05g01567 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 288 - -
Cca05g01567 306 CDD SANT 126 170 IPR001005 -
Cca05g01567 306 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Cca05g01567 306 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Cca05g01567 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Cca05g01567 306 Gene3D - 20 86 - -
Cca05g01567 306 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Cca05g01567 306 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Cca05g01567 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Cca05g01567 306 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Cca05g01567 306 CDD SANT 26 72 IPR001005 -
Cca05g01567 306 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Cca05g01567 306 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 288 IPR043363 -
Cca05g01567 306 SMART sant 123 173 IPR001005 -
Cca05g01567 306 SMART sant 23 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01567 Cca-Chr5 34834403 34836859 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca05g01567 Myb_DNA-binding 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01567 - - ccaj:109813886 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01567 05 34834403 34836859 Cca01g01834 01 42742172 42744961 ECH
Cca07g01537 07 39782663 39785324 Cca05g01567 05 34834403 34836859 ECH
Cca01g01834 01 42742172 42744961 Cca05g01567 05 34834403 34836859 ECH
Cca05g01238 05 29957638 29960043 Cca05g01567 05 34834403 34836859 ECH
Cca01g00715 01 9365367 9368115 Cca05g01567 05 34834403 34836859 ECH
Cca05g01567 05 34834403 34836859 Cca05g01567 05 34834403 34836859 ECH
Cca01g00327 01 3738098 3739694 Cca05g01567 05 34834403 34836859 PCT