Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01561 ATGTCTTTTATTGGTACCCAACAAAAGTGCAAGGCTTGTGACAAAACGGTTTATCCCGTTGATCAGTTATCTGCTGATGGCACTGCTTACCACAAAGCATGCTTCAAGTGCTCTCACTGCAAAGGAACCTTAAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGCTCTTTCAAGAAGAACTTTGTGTCACCTGCTAAGCAAACTGACAAAACAAGTCCTGAGCTGACAAAGACCCCTACTAAAGCTGCTAGCATGTTTTCTGGGACGCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCCTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCTTGTTTCAAATGTTCTCATGGTGGCTGTCCCATAACGCCATCGAACTATGCAGCCCTTGAAGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTAA 510 0.4431 MSFIGTQQKCKACDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFVSPAKQTDKTSPELTKTPTKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01561 169 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cca05g01561 169 Gene3D Cysteine Rich Protein 4 74 - -
Cca05g01561 169 Gene3D Cysteine Rich Protein 102 169 - -
Cca05g01561 169 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 169 - -
Cca05g01561 169 CDD LIM2_SF3 108 168 - -
Cca05g01561 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 169 - -
Cca05g01561 169 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cca05g01561 169 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Cca05g01561 169 Pfam LIM domain 10 65 IPR001781 -
Cca05g01561 169 Pfam LIM domain 108 163 IPR001781 -
Cca05g01561 169 SMART lim_4 107 159 IPR001781 -
Cca05g01561 169 SMART lim_4 9 61 IPR001781 -
Cca05g01561 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Cca05g01561 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Cca05g01561 169 CDD LIM1_SF3 6 68 - -
Cca05g01561 169 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Cca05g01561 169 PANTHER OS06G0237300 PROTEIN 1 169 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01561 Cca-Chr5 34803996 34806327 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Cca05g01561 LIM 1.8e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01561 K09377 - gmx:100807765 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01561 05 34803996 34806327 Cca05g01561 05 34803996 34806327 ECH