Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01559 ATGGTTAAAGGACGGCAAGGAGAGCGCGTCAGACTTTATGTCAGGGGTTCTATTCTTGGATACAAGAGGTCCAAGTCGAATCAATACCCAAATACCTCTCTTATTCAGATTGAGGGAGTGAACTCCAAGGAAGAAGTTGCCTATTACTGCGGGAAGCGCATGGCTTACATTTACAAAGCAAAGGTTAAGAAGAATGGAACCCACTATCGCTGCATTTGGGATCAATGGGAGCAAGGGTTAGAGTCTTTATGTATCCAAGCAATATATGAGGTAATTTTCCCGTTTTATTGGTATCTTCTATTATTTTTACATTATCAATTGTTACCTAACTCTGTATGTTGGAAACTGATATTTATGTGTTGTTGCCAACCAAACTAG 378 0.3968 MVKGRQGERVRLYVRGSILGYKRSKSNQYPNTSLIQIEGVNSKEEVAYYCGKRMAYIYKAKVKKNGTHYRCIWDQWEQGLESLCIQAIYEVIFPFYWYLLLFLHYQLLPNSVCWKLIFMCCCQPN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01559 125 SUPERFAMILY Translation proteins 12 73 IPR009000 -
Cca05g01559 125 PANTHER 60S RIBOSOMAL PROTEIN L35A-1 1 75 - -
Cca05g01559 125 Pfam Ribosomal protein L35Ae 12 73 IPR001780 GO:0003735|GO:0005840|GO:0006412
Cca05g01559 125 PANTHER 60S RIBOSOMAL PROTEIN L35A 1 75 IPR001780 GO:0003735|GO:0005840|GO:0006412
Cca05g01559 125 Gene3D translation elongation factor selb, chain A, domain 4 6 78 IPR038661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01559 Cca-Chr5 34784900 34787504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01559 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G07070 84.000 2.15e-43 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01559 K02917 - ming:122070259 148.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01559 05 34784900 34787504 Cca05g01559 05 34784900 34787504 ECH