Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01558 ATGGTATCTGTATGTGGATATTGGTTAGAGTTAGTAGTTAGTAGGGCTTCATTTGCCGTAACTGTTAAGGAATTGACGGTGTTGTTCAGGTCCAAGTCGAATCAATACCCAAACACCTCTCTTATTCAGATTGAGGGAGTGAACTCCAAGGAAGAAGTTGCCTATTACTGCGGGAAGCGCATGGCTTACATTTACAAAGCAAAGGTTAAGAAGAATGGAACCCACTATCGCTGCATTTGGGGTAAGGTCACCAGGCCTCATGGTAACAGCGGTATTGTCCGTGCTAAGTTCAAGTCCAATCTACCACCGAGATCAATGGGAGCAAGGGTTAGAGTCTTTATGTATCCAAGCAATATATGA 360 0.4361 MVSVCGYWLELVVSRASFAVTVKELTVLFRSKSNQYPNTSLIQIEGVNSKEEVAYYCGKRMAYIYKAKVKKNGTHYRCIWGKVTRPHGNSGIVRAKFKSNLPPRSMGARVRVFMYPSNI 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01558 119 Pfam Ribosomal protein L35Ae 30 113 IPR001780 GO:0003735|GO:0005840|GO:0006412
Cca05g01558 119 PANTHER 60S RIBOSOMAL PROTEIN L35A 29 119 IPR001780 GO:0003735|GO:0005840|GO:0006412
Cca05g01558 119 Gene3D translation elongation factor selb, chain A, domain 4 20 119 IPR038661 -
Cca05g01558 119 PANTHER 60S RIBOSOMAL PROTEIN L35A-1 29 119 - -
Cca05g01558 119 SUPERFAMILY Translation proteins 30 113 IPR009000 -
Cca05g01558 119 ProSitePatterns Ribosomal protein L35Ae signature. 81 102 IPR018266 GO:0003735|GO:0005840|GO:0006412
Cca05g01558 119 Hamap 50S ribosomal protein L35Ae [rpl35ae]. 21 113 IPR001780 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01558 Cca-Chr5 34777100 34778768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01558 30 119 Cytoplasmic Ribosomal Protein Gene Family AT1G74270 86.667 9.60e-57 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01558 K02917 - nnu:104593384 185.267