Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01555 ATGACCGAAAAAGACCGCTCCGCCGAACCAACCCTCCGCAATGGCGTCGACGCCGGAGAGGACTTCCAACTCATCGGAGGCGATGCTGAGGTCGCGGTCGTAGGCGACGGCTCCGTGGCCGGGAGAGTGAAGGGACCGTGGTCGCCGGAGGAGGACGAGGTGCTCAGCCGATTGGTGGCGCAGTTCGGGGCCAGGAACTGGAGCATGATTGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTGCGTGAAACGCAAGCCCTTCACTGAGGAAGAGGACAACATCATAGTTTCAGCCCATGCAATCCACGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGTAGAACAGACAATGCGATCAAGAATCACTGGAATTCTACGCTGAAGCGCAGGTGTATGGAACTGGGAAGATATGTCCCAGCACATCCTGATGTGATTGAAGATGGTAGCTATGAAAAAGCAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTGCAGAAATCAGAAATGTCTTGATGGATAATGAAAATAAAACTCCAAGAGAAAATGATGCTAAAGTTGAGGAACATCCTACCCTTTATAGACCAGTAGCACGTATTAGTGCATTTAGTGTTTATAATCCTCCAGGCAGGCCAACAACTGGATCATGTTCAAAGATATTCCCAAGGCAGAGCCCTTTGATAGTATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATGGTATTGATTGTGAGCCCATGGTTCCATTGCAATGTGGTCATGGCTGCTGCGCAGCAGACTCAAGGGAAAGCCATTCACATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTATTTGGAGTCACCTTCTTTCTCTAGTCATGCATTGATTTCAATAGCCACCGACTTAAACAATATAGCTTGGATCAAGAGTGGCCTTGATAATTGTAGTGCTGGAGTAACTGATAATACTGCAAACTTGACAGCATCTCAAGGGGTTGCCACTGCTTCGCAAACAAACTTCTTACGACAAGATCTTAGGAATGGCTACGGGCAATTTGAGGAGGGACCAAGCAATTTTTTGGGTGCGATGCAAGAAGTGTTATCAACAAAGATGGCTAGGCAACATTTAGCAATGCCTGCGGAAGTTTGA 1197 0.4871 MTEKDRSAEPTLRNGVDAGEDFQLIGGDAEVAVVGDGSVAGRVKGPWSPEEDEVLSRLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDNIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMELGRYVPAHPDVIEDGSYEKAKASSEETMSIGDINSLNPAEIRNVLMDNENKTPRENDAKVEEHPTLYRPVARISAFSVYNPPGRPTTGSCSKIFPRQSPLIVSPKPDVGSCKLFDGIDCEPMVPLQCGHGCCAADSRESHSHGSLLGPEFVDYLESPSFSSHALISIATDLNNIAWIKSGLDNCSAGVTDNTANLTASQGVATASQTNFLRQDLRNGYGQFEEGPSNFLGAMQEVLSTKMARQHLAMPAEV 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01555 398 PANTHER MYB PROTEIN-RELATED 19 331 - -
Cca05g01555 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Cca05g01555 398 SMART sant 43 92 IPR001005 -
Cca05g01555 398 SMART sant 95 143 IPR001005 -
Cca05g01555 398 CDD SANT 46 88 IPR001005 -
Cca05g01555 398 Gene3D - 43 95 - -
Cca05g01555 398 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Cca05g01555 398 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Cca05g01555 398 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 90 IPR017930 -
Cca05g01555 398 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Cca05g01555 398 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 19 331 - -
Cca05g01555 398 CDD SANT 98 141 IPR001005 -
Cca05g01555 398 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Cca05g01555 398 ProSiteProfiles Myb-like domain profile. 44 90 IPR001005 -
Cca05g01555 398 Gene3D - 97 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01555 Cca-Chr5 34729946 34734481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01555 39 330 MYB Transcription Factor Family AT3G55730 50.161 2.95e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g01555 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01555 K09422 - gmx:100781228 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01555 05 34729946 34734481 Cca01g01776 01 41594043 41601311 ECH
Cca05g01555 05 34729946 34734481 Cca05g01555 05 34729946 34734481 ECH