Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01553 ATGTTGGTCACTACTGAGGACAAGTCTCAATCTCATGTTGTTGTTGACATAGACAATGTTTGCTGTCACCGGAGCTCGGCCGTCGGCGAGGGGTGCTCCGACGCCGGAGACCGGTCAGATGAAGAGCAAAGGTCCTCCCATGGCTCTGGCACTGAGATTGTGGGAGTGTGTGAGAAGAAGAGAGGATCCTCTGCATCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCAGCTCCTGAGGTTAAGGTGCATTTGGCTAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAATCATGAATCTGGAACTCCCATTGAGCTAGGATGTTCTTGTAAGGATGATTTGGCTGCAGCTCACAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAAAACTTGTGAAATCTGTGGATCAATTGCACGCAACGTAGCTGGTGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAATGATGGTTCCACGGTACCACCATCTGGACCGGCACCACCGGCAGAAATTCGAAATTTCTGGCAGGGTCACCGTTTCTTGAATTTCCTTCTAGCCTGCCAACCTATGCCTCTTAACACAGGTATGTTTGTTTTTCAGTTCAAAGTAACCCAAAAGCAACACATTATTTGCTTGAGCTTTTTTCATCGGAAAGTGAAAAAAGTCCGTTTAACTAGTTTTGAACGGATTTCTAAACACACGTAG 741 0.471 MLVTTEDKSQSHVVVDIDNVCCHRSSAVGEGCSDAGDRSDEEQRSSHGSGTEIVGVCEKKRGSSASECSVEVDLEEGAAPEVKVHLANVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDGSTVPPSGPAPPAEIRNFWQGHRFLNFLLACQPMPLNTGMFVFQFKVTQKQHIICLSFFHRKVKKVRLTSFERISKHT 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01553 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Cca05g01553 246 MobiDBLite consensus disorder prediction 28 50 - -
Cca05g01553 246 SMART ringv_2 92 145 IPR011016 GO:0008270
Cca05g01553 246 ProSiteProfiles Zinc finger RING-CH-type profile. 85 151 IPR011016 GO:0008270
Cca05g01553 246 Pfam RING-variant domain 93 144 IPR011016 GO:0008270
Cca05g01553 246 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 200 - -
Cca05g01553 246 CDD RING_CH-C4HC3_MARCH 93 145 - -
Cca05g01553 246 SUPERFAMILY RING/U-box 90 147 - -
Cca05g01553 246 PANTHER ZINC FINGER, RING-CH-TYPE 11 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01553 Cca-Chr5 34722311 34726517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01553 33 215 C3H Transcription Factor Family AT5G05830 56.757 3.34e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01553 - - gmx:100818979 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01553 05 34722311 34726517 Cca01g01775 01 41554180 41558248 ECH
Cca07g01494 07 38961698 38965281 Cca05g01553 05 34722311 34726517 ECH
Cca01g01775 01 41554180 41558248 Cca05g01553 05 34722311 34726517 ECH
Cca05g01553 05 34722311 34726517 Cca05g01553 05 34722311 34726517 ECH