Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01544 ATGTTTCCACTGATTTTCTCTGGAAATGCACCCAACACTGCGGATGGATATAACAGTAGCATATCCAGGCTTTGCTTGGATAACTCTTTGGATAAACATTTGGTGAAAGGAAAGATTGTTCTGTGTGACGGCTTTGATTCTTCTAAAGTTGGGGGTTTGTCTGGGGCAGTTGGGATGCTTGTTGGATCCCCTATTTCAAAAGATTCTCCATTCACACTTGCGCTGCCTGCAGCTTTGCTTAGTCAAAGGAACATCCTTAGTGTATTTTCATACATGACTTCAACGAGTAATTCAACAGCCACAATATTTAGGAGTGTTGAAGTCAATGATACAGCAGCCCCTTACGTAGCTTCCTTTTCAGCTAGAGGTCCCAATCCATTCACGCCAAACACTCTCAAGCCTGACCTTGCTGCTCCAGGAGTTAACATTCTAGCTGCATGGACTCCACTCAACCCAATTTCACATTTTAAAGGTGACAAAAGACCAGCACACTACAATTTAGCATTTGGCACTTCAATGGCTTGCCCTCATGCATCCGCAGCAGCTGCATATGTCAAATCATTTCATCCCAATTGGTCTCCTGCTATGATCAAGTCTGCCTTAATGACCACCGCTACTCCAATGAGTCCTACTCCTAATCCTGATGTTGAATTTGCATATGGCGCGGGGCAAATTAATCCTGTTAAAGCAGCAAATCCTGGTTTAGTGTATGACATTAGTGAAGCAGATTATGTCAAGTTCTTGTGCGGAGAGGGCCTTACAAATGAACAACTCCGAAAGATCACTAGGGATCATAGTAGTTGCAGCAAACACTCTAAAAAGGAAGCTGTATACGAATTCAATCTCCCATCATTTGCTCTTCATGTAAACGTCTCAGAATATTTCAGTCATGTTTTCAATAGAACGGTTACAAACGTGGGATTGGCAACATCTAGCTATAAAGCCAAAGTGGTGTCTCCTTCTTTGTTGGATATTCAAGTGGAACCAAATGTTCTGTCCTTCACATCAATTGGGCAGAAGAAGAAATTCTCAGTCATAATTGAAGGGAGTATTAATGTGGAAATACTCTCTGCTTCTATAGTTTGGGATGATGGAACTTTTCAAGTTAGAACCACCATTGTAGTGTACGGTGAACTCAAATAA 1143 0.4173 MFPLIFSGNAPNTADGYNSSISRLCLDNSLDKHLVKGKIVLCDGFDSSKVGGLSGAVGMLVGSPISKDSPFTLALPAALLSQRNILSVFSYMTSTSNSTATIFRSVEVNDTAAPYVASFSARGPNPFTPNTLKPDLAAPGVNILAAWTPLNPISHFKGDKRPAHYNLAFGTSMACPHASAAAAYVKSFHPNWSPAMIKSALMTTATPMSPTPNPDVEFAYGAGQINPVKAANPGLVYDISEADYVKFLCGEGLTNEQLRKITRDHSSCSKHSKKEAVYEFNLPSFALHVNVSEYFSHVFNRTVTNVGLATSSYKAKVVSPSLLDIQVEPNVLSFTSIGQKKKFSVIIEGSINVEILSASIVWDDGTFQVRTTIVVYGELK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01544 380 CDD PA_subtilisin_like 1 102 - -
Cca05g01544 380 Pfam Fibronectin type-III domain 280 375 IPR041469 -
Cca05g01544 380 SUPERFAMILY Subtilisin-like 105 299 IPR036852 GO:0004252|GO:0006508
Cca05g01544 380 ProSiteProfiles Serine proteases, subtilase domain profile. 1 231 - -
Cca05g01544 380 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 377 IPR045051 -
Cca05g01544 380 Pfam Subtilase family 84 223 IPR000209 GO:0006508|GO:0008236
Cca05g01544 380 ProSitePatterns Serine proteases, subtilase family, serine active site. 170 180 IPR023828 -
Cca05g01544 380 Gene3D - 248 377 - -
Cca05g01544 380 Gene3D Peptidase S8/S53 domain 110 244 IPR036852 GO:0004252|GO:0006508
Cca05g01544 380 Gene3D - 2 109 - -
Cca05g01544 380 PANTHER PUTATIVE-RELATED 1 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01544 Cca-Chr5 34598160 34599582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01544 2 376 Subtilisin-like Serine Gene Family AT5G59100 44.094 1.71e-98 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01544 - - gmx:100787973 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01544 05 34598160 34599582 Cca05g01544 05 34598160 34599582 ECH