Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01542 ATGGCCTCTTTAAGGCCATGCCTTTTTTTCATTCTTCTCTGCATTTCGATAATTAATCATGCACATTCCAAGAATGTTCGCAAGACTTACATTGTCTACATGGGAGATCATCCTAAGGGCATGGACTCCACTTCTATACCTTCTCTTCATACGGCCATGGCTCAAAAAGTTCTTGGCAGCGATTTCAAACCAGAAGCCTTACTTCACAGCTACAAGAACTTTAATGCATTCGTCATGAAGTTAACAGAAGAGGAGGCTGAAAGAACGGCAGAAATGGAGAACGTTATCTCAGTTTTCCCAAACTCCAAGAAGAGTCTTCACACAACAAGATCCTGGAACTTCATAGACTTTCCCCAGAATGTCAAAAGAGAAACTAGAGAGAGTGACATAATTGTGGGAGTACTGGACTCGGGAATTTGGCCGGAGTCTGAGAGCTTTAGTGGCAAAGGATTTGGTCCTCCACCTAGCAGATGGAAAGGATCATGTCATAACTTTACCTGCAACAACAAAATAATTGGCGCAAAGTACTTCAATCTGGAACACGAGTTTGCGAAAGAGGATATAATATCTCCCAGGGATGCTGAAGGTCACGGATCACACTGTGCATCGACAGTGGCCGGAAATTCAGTTAACTCAGTGAGTCTATTTGGGTTAGCTTCAGGGGCTGCCCGCGGAGGAGTTCCATCTGCCCGAATTGCTGTCTACAAAGTATGTTGGAAAGAACATTGCCATGATGATGACATTCTTGCAGCATTTGATGAAGCTATTTCTGATGGAGTAGACATTATTTCTATTTCAATAGGACCACGTATTGTACACTACTTTCCGTATTTTCAAGATCCCACCCATATAGGAAGTTTCCATGCAATGAAAAGAGGCATCTTAACGTCAAATTCTGGCGGTAATGAGGGTCCGTCTTTTTCCTCTATGTCAAATCTAGCACCCTGGTTACTTTCGGTGGCGGCTAGCTCTTTTGACAGGAAGATTGTAACCAAGGTGCAGTTGGGCAATGGAGCTGTTTATGAGGGGGTTTCAATTAACACATTTAATCTTAAGAAAAAATTGTATCCACTTATTTACGGTGGAGATATACCCAACATTGCTGGTGGACATAACAGCTCCACATCGAGGTATTGCATACGGAACTCTTTGGATAAAGATTCAGTGAAGGGAAAGATTGTTCTGTGTGAAATAACTCATGGTACAGACATCGATTCTTTATCTGGGATTGGGGCAGTTGGTGTTATATTGGGAAGTAATAGCCCTCAAGATTCGGCCAGTGCATTTGTCCTGCCTGCTGCGATCCTTTCTCCATGGAACCAAAGACTCATCCATTCTTACATAACTTCAACCAGAAATGCTACGGCCACAATATTTAAGAGTGAAGAAATAAACGATGGATTAATTCCTTTCGTAGCTTCGTTCTCATCAAGAGGTCCAAATCCAATAACACCGAATACTCTAAAGCCTGACATTGCTGCCCCTGGAGTTGAAGTTATAGCTGCATGGTCTCCAGTTAGCCCAATTTCAGATGTTAAAGGAGACAAAAGAAAAGTACAATATAATGTAATCTCTGGCACTTCAATGGCATGCCCTCATGCTTCTGCAGCAGCTGCATATATCAAATCATTTCACCCTAATTGGTCTCCTGCTATGATCAAGTCTGCGTTGATGACTACTGCTACTCCAATGAGTCATGTTCTTAATCCCGAGGCTGAATTTGCATATGGAGCGGGCCTAATTAATCCTGTTAAGGCTGCAAATCCTGGTTTAGTATATGATATTAGTGAAGCTGATTATATCAAATTCTTATGTGGAGAAGGGTATACAGATGAAATGCTTCGAAACCTCACCAAAGATCATAGTAGTTGCAAAGTACAAGCTAGTAAGAGAGCGGTATACGAATTAAACCTCCCATCATTTGCTCTTTTTACGAACCACTCAACTTTTAGTCGTGCTTACTTCAGAACAGTTACAAATGTTGGATCAGCAACGGCTACTTATAAAGCCCGTGTAATTGCTTCACCTTTGTTACAAATTCAAGTGAAACCTAGTACTCTTTCCTTCACGTCTATTGGACAGAAAAAGTCATTCTCACTCATAATTGAAGGGATAACTAATCTGGATATAATTTCCGCTTCTTTGATTTGGGATGATGGTAGTCATCAAGTTAGAAGCCCAATTGTAGTGTATGGTAGAATGGGAATGTAA 2211 0.4134 MASLRPCLFFILLCISIINHAHSKNVRKTYIVYMGDHPKGMDSTSIPSLHTAMAQKVLGSDFKPEALLHSYKNFNAFVMKLTEEEAERTAEMENVISVFPNSKKSLHTTRSWNFIDFPQNVKRETRESDIIVGVLDSGIWPESESFSGKGFGPPPSRWKGSCHNFTCNNKIIGAKYFNLEHEFAKEDIISPRDAEGHGSHCASTVAGNSVNSVSLFGLASGAARGGVPSARIAVYKVCWKEHCHDDDILAAFDEAISDGVDIISISIGPRIVHYFPYFQDPTHIGSFHAMKRGILTSNSGGNEGPSFSSMSNLAPWLLSVAASSFDRKIVTKVQLGNGAVYEGVSINTFNLKKKLYPLIYGGDIPNIAGGHNSSTSRYCIRNSLDKDSVKGKIVLCEITHGTDIDSLSGIGAVGVILGSNSPQDSASAFVLPAAILSPWNQRLIHSYITSTRNATATIFKSEEINDGLIPFVASFSSRGPNPITPNTLKPDIAAPGVEVIAAWSPVSPISDVKGDKRKVQYNVISGTSMACPHASAAAAYIKSFHPNWSPAMIKSALMTTATPMSHVLNPEAEFAYGAGLINPVKAANPGLVYDISEADYIKFLCGEGYTDEMLRNLTKDHSSCKVQASKRAVYELNLPSFALFTNHSTFSRAYFRTVTNVGSATATYKARVIASPLLQIQVKPSTLSFTSIGQKKSFSLIIEGITNLDIISASLIWDDGSHQVRSPIVVYGRMGM 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01542 736 Pfam Fibronectin type-III domain 635 730 IPR041469 -
Cca05g01542 736 PRINTS Subtilisin serine protease family (S8) signature 127 146 IPR015500 -
Cca05g01542 736 PRINTS Subtilisin serine protease family (S8) signature 193 206 IPR015500 -
Cca05g01542 736 PRINTS Subtilisin serine protease family (S8) signature 525 541 IPR015500 -
Cca05g01542 736 Pfam Peptidase inhibitor I9 29 106 IPR010259 -
Cca05g01542 736 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 19 731 IPR045051 -
Cca05g01542 736 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 14 107 IPR037045 -
Cca05g01542 736 PANTHER PUTATIVE-RELATED 19 731 - -
Cca05g01542 736 Gene3D - 326 465 - -
Cca05g01542 736 CDD Peptidases_S8_3 106 562 IPR034197 -
Cca05g01542 736 Gene3D - 604 733 - -
Cca05g01542 736 ProSiteProfiles Serine proteases, subtilase domain profile. 111 587 - -
Cca05g01542 736 SUPERFAMILY Subtilisin-like 106 591 IPR036852 GO:0004252|GO:0006508
Cca05g01542 736 Pfam Subtilase family 128 579 IPR000209 GO:0006508|GO:0008236
Cca05g01542 736 ProSitePatterns Serine proteases, subtilase family, serine active site. 526 536 IPR023828 -
Cca05g01542 736 Gene3D Peptidase S8/S53 domain 129 600 IPR036852 GO:0004252|GO:0006508
Cca05g01542 736 ProSitePatterns Serine proteases, subtilase family, histidine active site. 197 207 IPR022398 -
Cca05g01542 736 CDD PA_subtilisin_like 333 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01542 Cca-Chr5 34581008 34588709 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01542 7 731 Subtilisin-like Serine Gene Family AT3G46850 47.984 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01542 - - gmx:100815516 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01542 05 34581008 34588709 Cca05g01542 05 34581008 34588709 ECH